Hi Sherryse
what system are you running on? I saw this on an ubuntu system and it
seemed to be a bug in one of the 3rd party libraries that we don't have
access to. Can you try it on another machine, like a centos 6 one?
thanks
Bruce
On Tue,
21 Jan 2014, Sherryse Corrow wrote:
We are doing some cortical flat mapping in FreeSurfer. We are following
these instructions:
http://openwetware.org/wiki/Beauchamp:FreeSurfer#Creating_Flat_Maps. We are
able to create the flat map without a problem. However, just before we are
able to do the last step "Save the patch by clicking File->Patch->Save Patch
As" the process crashes and the flat map is lost.
In the terminal, we see this error:
surfer: filling (ctrl-c to cancel)...... done, 154370 vertices filled
#Filling the uncut area was successful.
surfer: ripped 12057 vertices
tksurfer.bin: tnl/t_vertex.c:407: update_input_ptrs: Assertion
`a[j].inputstride == vptr->stride' failed.
Abort (core dumped)
So, the uncut area is filled and before we have time to click File, Save As,
etc. . . the process crashes and we have to start the process over again.
Any suggestions? Thanks for your time.
--
Sherryse Corrow, Ph.D. / Postdoctoral Fellow
Human Vision and Eye Movement Lab
Department of Ophthalmology & Visual Sciences
UBC/VGH Eye Care Centre
360A-2550 Willow Street
Vancouver, BC, V5Z 3N9
Tel: 604-875-4111 ext 67672
Cell: 604-315-6717
[email protected]
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