Hi Ed I believe so, but perhaps others who have more experience with the long stream can answer
Bruce On Tue, 4 Feb 2014, Ed Gronenschild wrote: > Hi Bruce, > > When I have a look in the recon-all script I see that it is tested if there > are voxels present in wm.mgz with value 1 or 255. Both indicate > wm editing. The comment in recon-all says that 1 means remove > and 255 means add. > And concerning my second question: are these edited voxels > correcly processed with the option autorecon2-wm and subsequently > with longitudinal processing? > > Cheers, > ed > > On 4 Feb 2014, at 14:27, Bruce Fischl wrote: > >> Hi Ed, >> >> yes, although we reserve the values under 5 I think for editing changes, >> I believe we only use 1 at the moment. >> >> cheers >> Bruce >> On Tue, 4 Feb 2014, Ed Gronenschild >> wrote: >> >>> Hi, >>> >>> From what I can read in the wiki about wm editing, I understand >>> that edited wm voxels have values of either 255 (added) or >>> 1 (removed) and no other values. These are stored in the file >>> wm.mgz. Is that correct? >>> Before processing a lot of data I want to be sure that running >>> recon-all with the option autorecon2-wm will recognize these >>> voxels, also during longitudinal processing. Can you confirm >>> this. >>> >>> FreeSurfer v5.3.0 Mac OSX10.6 >>> >>> Kind regards, >>> Ed >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> [email protected] >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
