Hi Ed, take a look at this wiki page about edits in the long stream: https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalEdits
everything should work. for long, you'd edit the base. If that is not sufficient, you can edit the cross or the long. Edits from the cross should be transferred to the long, except if the long already contain manual edits. Best, Martin On Feb 4, 2014, at 9:06 AM, Ed Gronenschild <[email protected]> wrote: > Hi Bruce, > > When I have a look in the recon-all script I see that it is tested if > there > are voxels present in wm.mgz with value 1 or 255. Both indicate > wm editing. The comment in recon-all says that 1 means remove > and 255 means add. > And concerning my second question: are these edited voxels > correcly processed with the option autorecon2-wm and subsequently > with longitudinal processing? > > Cheers, > ed > > On 4 Feb 2014, at 14:27, Bruce Fischl wrote: > >> Hi Ed, >> >> yes, although we reserve the values under 5 I think for editing >> changes, >> I believe we only use 1 at the moment. >> >> cheers >> Bruce >> On Tue, 4 Feb 2014, Ed Gronenschild >> wrote: >> >>> Hi, >>> >>> From what I can read in the wiki about wm editing, I understand >>> that edited wm voxels have values of either 255 (added) or >>> 1 (removed) and no other values. These are stored in the file >>> wm.mgz. Is that correct? >>> Before processing a lot of data I want to be sure that running >>> recon-all with the option autorecon2-wm will recognize these >>> voxels, also during longitudinal processing. Can you confirm >>> this. >>> >>> FreeSurfer v5.3.0 Mac OSX10.6 >>> >>> Kind regards, >>> Ed >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> [email protected] >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > --------------------------------- Dr. Martin Reuter Assistant in Neuroscience - Massachusetts General Hospital Instructor in Neurology - Harvard Medical School MGH / HMS / MIT A.A.Martinos Center for Biomedical Imaging 149 Thirteenth Street, Suite 2301 Charlestown, MA 02129 Phone: +1-617-724-5652 Email: [email protected] [email protected] Web : http://reuter.mit.edu
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