Does not accept "-nuis" flag. I changed my mkanalysis-sess to this:
mkanalysis-sess -analysis ColorPrj_TR4_1p5mm_PR_ANOVA -fwhm 1.5 -paradigm Conds.par -native -event-related -polyfit 2 -gammafit 2.25 1.25 -nuis mcprextreg -TR 4 -nconditions 8 -refeventdur 14 -force -fsd bold_Color -per-run and got this error: ERROR: Flag -nuis unrecognized. > > I think it is just confused because it expects native to be per-session. > One way around this is to just specify -nuis mcprextreg instead of > -mcprextreg > doug > > > On 03/19/2014 11:15 AM, sha...@nmr.mgh.harvard.edu wrote: >> But this is a per-run analysis and preproc-sess is -per-run (in native >> space). I assumed that I have to change my mkanalysis-sess to this: >> >> mkanalysis-sess -analysis ColorPrj_TR4_1p5mm_PR_ANOVA -fwhm 1.5 >> -paradigm >> Conds.par -native -event-related -polyfit 2 -gammafit 2.25 1.25 >> -mcprextreg -TR 4 -nconditions 8 -refeventdur 14 -force -fsd bold_Color >> -per-run >> >> >> But using -mcprextreg flag generates an error. Is it a bug? >> >> >>> There is not an mcextreg file there. There is mcprextreg file. I think >>> you need to run preproc with -per-session to get the mcextreg file >>> doug >>> >>> On 03/18/2014 02:34 PM, SHAHIN NASR wrote: >>>> Hi, >>>> When I run selxavg3-sess, I face this error: >>>> >>>> ERROR: cannot find volume matching >>>> /autofs/cluster/tootell/pitcairn/1/shahin/ColorPrj/7T/Sbj/myla2/bold_Color/013/mcextreg >>>> ERROR: loading nonpar reg >>>> /autofs/cluster/tootell/pitcairn/1/shahin/ColorPrj/7T/Sbj/myla2/bold_Color/013/mcextreg >>>> ------------------------------------------ >>>> ERROR: fast_selxavg3() failed\n >>>> >>>> I repeated the preproc-sess from scratch and it worked fine, >>>> finished without any problem and I still get the same error. I even >>>> check the registration in this run and it fine. >>>> >>>> Now I am wondering why do I see this error for this subjects (and >>>> why I don't see it for the other subjects)? >>>> >>>> Regards >>>> -- >>>> Shahin Nasr >>>> >>>> PhD in Cognitive Neuroscience >>>> Martinos Imaging Center, MGH >>>> Harvard Medical School >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>> >>> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
