Hi Charnjit, that script is Maria's code I think (which is why it is a good idea to post to the list and not to us personally :-) doug
On 03/21/2014 07:28 AM, Charnjit Sidhu wrote: > Hi Doug, > > I think the problem is similar to the following post on the mailing lists: > > https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg29476.html > > I think the error "denied: host hostname is no submit host" is being caused > when matlab is requested in the make_outer_surface process, if you can tell > me where and how matlab is requested in the process I can then add code to > run our script that enables matlab to run on our cluster. > > Thanks > > Charnjit > > > > > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: 19 March 2014 15:14 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] (no subject) > > Hi, I have not idea what is going wrong. I would try goggling that error > msg to see what it means and how it might be fixed > > doug > > > On 03/19/2014 06:32 AM, Charnjit Sidhu wrote: >> Dear freesurfers, >> >> This is the first time I am posting so hope the following makes sense, I >> don't use freesurfer but manage the installation of freesurfer on our >> cluster. >> >> We have a user who is trying run a script that submits a recon-all job to >> our cluster using the -localGI flag: >> >> recon-all -subjid $i -localGI >> >> I know this requires matlab which we have installed on the cluster however >> we cannot submit matlab within a working node which the submitted node is >> trying to do, we get the following error: >> >> denied: host "hostname" is no submit host >> >> this message is given when the make_outer_surface script matlab script is >> submitted within the submitted job. >> >> We have a script that allows matlab to run from within the cluster and have >> tried to add this as an environment variable to the script: >> >> matlab=matlab_cluster ; export matlab >> source $matlab >> >> But when we add this it still fails with the same error, >> >> Do you know how I can make changed to the script allowing us to run the >> above script when matlab is called? Or are we missing something from our >> script? >> >> I have attached the relevant scripts and output sent to me by the user. >> >> Can you help me. >> >> Thanks >> >> Charnjit >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
