Hi Jinnan do you mean track from a subcortical structure to cortex and show the targets on the surface? I believe that can be done with the FSL tools in combination with our surfaces. Perhaps Anastasia can comment?
Bruce On Fri, 11 Apr 2014, Douglas N Greve wrote: > > Hi Jinnan, I don't know what you mean by showing tractography results of > BG in the surface. If you have an ROI in the DTI space that you want to > convert to the surface, use bbregister with --mov lowb.nii where lowb is > the volume with b=0. You can then map any volume that is in alignment > with the lowb to the surface > > doug > > ps. please remember to include previous email threads in the current > email, otherwise we cannot remember the context > > > On 04/10/2014 09:04 PM, gong jinnan wrote: >> Hi Prof. Greve, >> Thanks for your reply. Sorry, perhaps I have made some mistake in my >> data analysis. I just want to show tractography results of basal ganglia in >> surface space using FSL. Could transform fit_paths.nii.gz to surface be a >> brief way? >> In order to do mdi_vol2surf (transform volume ROIs in T1 space to >> surface) I should have register.dat. Is that a correct way to get it using >> "bbregister --s SubID --mov T1.nii --init-fsl --reg register.dat " >> Sincerely, >> Jinnan >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
