I just looked at the code, and I don't think -c will work. Sorry, I don't think there is an easy way around it. You might be able to make the files read-only, but that might cause selxavg3-sess to crash doug
On 4/20/14 4:50 PM, Sebastian Moeller wrote: > Hi Reza, > > > On Apr 20, 2014, at 14:58 , Reza Rajimehr <[email protected]> wrote: > >> I have done a functional analysis for some contrasts using selxavg3-sess. >> In the contrast folders, I have added some files. Now I want to do the >> same analysis for some new contrasts. My guess is that selxavg3-sess >> computes all the contrasts again, and I am worried that the new folders >> overwrite the previous ones and I lose the files that I have manually >> added. If this is the case, is there a way to run selxavg3-sess for some >> specified contrasts? > >From selxavg3-sess --help: > Optional Arguments: > > -overwrite : delete analysis if session of already analyzed > -contrasts-only : only compute contrasts (estimation already done) <-co> > -c c1 <-c c2 ...> : compute contrasts c1, c2, ... (default is to compute > all) > -no-con-ok : run even if no contrasts in analysis > -fwhm : compute FWHM of residual > > so maybe adding: -contrasts-only and -c my_contrast will do the trick? I > assume you already created my_contrast before. This used to work for FS3.5 > and 4.5 if I recall correctly. > > Best Regards > sebastian > > >> Thanks, >> Reza >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
