[Freesurfer] FS QA Tools: Output, html and .gif Files

[Jessica Bernard]

Hi All,

I've been running the Freesurfer QA Tools on some new data, and have been
having some difficulties with the outputs. I am running this using the
-snaps-detailed flag. In the past, we have had .html links, but also
detailed .gif files for each person. We've consistently had trouble with
the .html links, but the .gif files have been perfectly fine. However, when
running new individuals, not only are the images broken in the .html
output, but there are no gif files (which are preferred). Is there an
additional command that needs to be added to generate the detailed gif
files as well? Sorry if this is a rather basic question. I recently took
over the Freesurfer QA process, and am relatively new to the functions, and
my predecessor does not know how they created the gif files (the first
batch of QA was run 6 months ago with our first wave of data collection).
Thanks in advance for any help you may be able to provide.

Best Wishes,
Jessica

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