Re: [Freesurfer] FS QA Tools: Output, html and .gif Files

[Jessica Bernard]

Hello,

I just wanted to follow up to note that I did a bit more digging, and
compared the freesurfer log files on this new batch, versus that which was
successfully run last August. There are no differences in terms of the log
files, with the exception of course that additional people were run. I also
completely re-ran everyone, and removed the old successfully run files to a
back-up drive to be able to go from scratch, and have still not been able
to generate the snapshots. ImageMagik and GNU awk are both up to date. Any
suggestions?

Thanks,
Jessica


On Mon, Apr 21, 2014 at 10:52 AM, Jessica Bernard <jbernar...@gmail.com>wrote:

> Hi All,
>
> I've been running the Freesurfer QA Tools on some new data, and have been
> having some difficulties with the outputs. I am running this using the
> -snaps-detailed flag. In the past, we have had .html links, but also
> detailed .gif files for each person. We've consistently had trouble with
> the .html links, but the .gif files have been perfectly fine. However, when
> running new individuals, not only are the images broken in the .html
> output, but there are no gif files (which are preferred). Is there an
> additional command that needs to be added to generate the detailed gif
> files as well? Sorry if this is a rather basic question. I recently took
> over the Freesurfer QA process, and am relatively new to the functions, and
> my predecessor does not know how they created the gif files (the first
> batch of QA was run 6 months ago with our first wave of data collection).
> Thanks in advance for any help you may be able to provide.
>
> Best Wishes,
> Jessica
>

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.