What is the full terminal output and error msg? On 11/21/2014 04:14 AM, Anna Jonsson wrote: > hi, I have tried to make prefrotnal cortex label by doing first > > > > mri_annotation2label --subject "$subject" --hemi rh --outdir > "$subject"/label > > > > mri_mergelabels -i lh.caudalanteriorcingulate.label -i > lh.caudalmiddlefrontal.label -i lh.lateralorbitofrontal.label -i > lh.medialorbitofrontal.label -i lh.parsopercularis.label -i > lh.parsorbitalis.label -i lh.parstriangularis.label -i > lh.rostralanteriorcingulate.label -i lh.rostralmiddlefrontal.label -i > lh.superiorfrontal.label -i lh.lateralorbitofrontal.label -o > lh.prefrontalcortex.label -d /directory/subject/label > > > which does create a label called x.prefrontalcortex.label in each > persons directory. then however when i try to do > > mris_anatomical_stats -l > $SUBJECTS_DIR/"$subject"/label/lh.prefrontalcortex.label "$subject" lh > pial | grep "thickness" >> left_prefrontal > > i get error and say it cant find label. any pointers on what im doing > wrong? > > thank you > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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