Hello,
I am interested in using TRACULA for my data, but I have a few questions about modifying the dmrirc configuration file. I have already conducted eddycorrect, bet, and dtifit in FSL, registration of T1 and dti using ANTs, and I have also registered individual subject data to a template created in our lab (rather than MNI_T1_1mm_brain.nii.gz). We tried FSL flirt alignment initially, and it did not work well for our data, thus we used a different program that yielded better alignment for our data, and I'd like to be able to input the data files I have already registered (rather than re-registering them through fsl flirt). Additionally, as I already have the dtifit output, as well as the registration steps complete, I want to ensure that I am specifying the correct parameters in the dmrirc configuration file before running TRACULA on the data. I have set the dtroot, subjlist, dcmroot, dcmlist, bvecfile, and bvalfile to the appropriate locations for our data. I have set doeddy = 0, and was wondering what further specifications I need to provide in the dmrirc configuration file to use my already processed (dtifit) and registered data in the TRACULA steps. I greatly appreciate any assistance with the dmrirc setup. Thank you, Michelle
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