Hi Annie, Please cc the freesurfer list when you reply because there might be other people more qualified to answer your question.
Based on what you are saying, I think you can first use mri_surf2surf (with the "sval-annot" flag) to transform the 2011 functional networks .annot file from fsaverage space to the subject's native surface space. Type "mri_surf2surf --help" to see examples. You can then use mris_anatomical_stats to compute thickness statistics. Cheers, Thomas On Tue, May 5, 2015 at 3:21 PM, 陳昱潔 <poohann1...@gmail.com> wrote: > Dear Pro. Yeo: > > Very appreciate for your reply ! > > We are trying to use your definition of the functional network regions to > re-parcellate our images > and get the regions of volume or cortical thickness for our study interest > of structural network. > However, we did not want to re-run the first recon-all again due to it's > spending to much time. > And we are still can't find the way to solve this problem. > Thank you very much for helping us! > > Best wishes, > Annie Chen > > 2015-05-02 8:25 GMT+08:00 Thomas Yeo <ytho...@csail.mit.edu>: >> >> Hi Yu-Chieh, >> >> I am cc-ing the freesurfer list who may help you with your issues. >> >> Can you explain what exactly you are trying do? The parcellation is >> released in different resolutions including fsaverage5. Why can't you >> just use the fsaverage5 parcellation? >> >> Cheers, >> Thomas >> >> On Fri, May 1, 2015 at 6:14 PM, 陳昱潔 <poohann1...@gmail.com> wrote: >> > Dear professor Yeo : >> > >> > My name is Yu-chieh Chen , I am a graduated student from National >> > Taiwan >> > University of medical school, and my supervisor is professor Susan >> > Shur-Fen >> > Gau from department of psychiatry, National Taiwan University Hospital & >> > College of Medicine. We are very interesting about your paper published >> > in >> > 2011 which using resting MRI to separate brain regions to functional >> > networks. We'd like to use your percellation to re-separate the brain >> > regions based on your released data in Freesurfer( >> > http://ftp.nmr.mgh.harvard.edu/fswiki/CorticalParcellation_Yeo2011). And >> > use >> > these volume of brain regions for our study, however, there comes the >> > problem that we assumed that we can change the fsaverage into >> > fsaverage5, >> > thus we may get the new volume of the parcellation_Yeo. But it is not >> > work. >> > So I send this email for help. Last , I am very appreciate your kindness >> > and >> > very sorry for my inappropriate and rough. >> > Thank you very much for read this email and sorry for occupied your >> > time. >> > >> > Best wishes, >> > Yu-chieh Chen >> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
