Ok how can I send you the files and commands? -----Original Message----- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Thursday, 30 July 2015 12:03 AM To: Freesurfer support list Subject: Re: [Freesurfer] dev version of mri_ca_label memory leak?
Hi Chris if you send me all the inputs to mri_ca_label and your exact command line I'll see if I can replicate it and either fix it or send you a new version. Or you can try the current dev version and see if it fixes things cheers Bruce On Wed, 29 Jul 2015, Chris Adamson wrote: > > Devs, > > > > I’m running the CVS version of Freesurfer, checked out on 28/7/2015 > (7/28/2015 for US people). I get to the –calabel step and mri_ca_label > takes a *long* time > (400 minutes) and uses a *lot* of memory. After it outputs “saving > sequentially combined intensity scales to > aseg.auto_noCCseg.label_intensities.txt” the memory consumption continues to > increase. Currently it is at 8.9GB. > > > > Can I send output to help debug this? > > > > Chris. > > > > Dr Chris Adamson > Research Officer, Developmental Imaging, Murdoch Childrens Research > Institute Murdoch Childrens Research Institute Royal Children’s > Hospital Flemington Road, Parkville, Victoria 3052, Australia > www.mcri.edu.au > > E chris.adam...@mcri.edu.au > T 03 9936 6780 > > > > > ______________________________________________________________________ > This email has been scanned by the Symantec Email Security.cloud service. > For more information please visit http://www.symanteccloud.com > ______________________________________________________________________ > > ______________________________________________________________________ This email has been scanned by the Symantec Email Security.cloud service. For more information please visit http://www.symanteccloud.com If you have any questions, please contact MCRI IT Servicedesk for further assistance. ______________________________________________________________________ ______________________________________________________________________ This email has been scanned by the Symantec Email Security.cloud service. For more information please visit http://www.symanteccloud.com ______________________________________________________________________ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
