[Freesurfer] recon-all

[John Anderson]

Hi freesurfers,

I am interested in studying the difference between the outer and deep white matter volume in my study groups.

I am thinking in the following procedures:

1. If there is any way in Freesurfer to do segmentation for the white matter (only in the depth of 3 cm) starting from the cortex. Then  second segmentation for the deep white matter.

2. Creating a mask ( using mri_binarize) for all the superficial white matter Freesurfer's labels and another mask for the deep white matter  ( how can I find the Freesurfer  deep white matter labels and the outer white matter labels ?)

3. If there is any atlas that can separate the outer and deep white matter then do the segmentation depending on this new atlas.

 

 

Thanks in advance for any suggestion,

John 

 

Bests,
John Anderson

Senior Research Associate
Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834
Fax: +1 (603) 646-1419

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