It works pretty well, thanks ! > On Oct 18, 2015, at 14:10, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > > you can use the -cm flag, but you might want to try out a beta of v6 instead > of 5.3 > On Sun, 18 Oct 2015, Yun Wang wrote: > >> Glad to hear this ! So how should I specify high resolution structure using >> recon-all command? >> >> >>> On Oct 17, 2015, at 10:09, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: >>> >>> High resolution fMRI has always been supported. V6 beta has better support >>> for high-resolution structurals. If your fMRI is higher than 1mm isotropic >>> then having higher res structurals (and hence denser cortical meshes) might >>> be useful >>> >>> cheers >>> Bruce >>> >>> >>> >>> On Sat, 17 Oct 2015, Yun Wang wrote: >>> >>>> Can the recon-all for high resolution fMRI data be used in V6 beta >>>> freesurfer now? If >>>> so, how to use it? >>>> >>>> On Jun 25, 2015, at 13:36, Allison Moreau >>>> <almor...@nmr.mgh.harvard.edu> >>>> wrote: >>>> Hi Falk and Thomas, >>>> We are actually working on testing the -hires flag now for the v6 release. >>>> We >>>> intend to release it with v6. >>>> -Allison >>>> On 06/25/2015 07:09 AM, Falk Lüsebrink wrote: >>>> Hi Thomas, >>>> >>>> this looks like a really nice script and a lot better than my own. In the >>>> upcoming release of FreeSurfer v.6 my work-around probably is not needed >>>> anymore. However, I haven’t been able to have a look at the dev release yet >>>> and whether the standard recon-all features a flag to process high >>>> resolution data. >>>> >>>> Best, >>>> Falk >>>> >>>> P.S. Following your instructions one will definitely become a coffee >>>> junkie. :D >>>> >>>> Von: freesurfer-boun...@nmr.mgh.harvard.edu >>>> [mailto:freesurfer-boun...@nmr.mgh.harvard >>>> .edu] Im Auftrag von Emmerling Thomas (PSYCHOLOGY) >>>> Gesendet: Mittwoch, 24. Juni 2015 14:35 >>>> An: freesurfer@nmr.mgh.harvard.edu >>>> Betreff: [Freesurfer] recon-all pipeline for (sub-millimeter) 7T data >>>> >>>> Hello! >>>> >>>> I wrote a bash script some time ago to process data acquired at a >>>> sub-millimeter resolution following the nice wiki entry of Falk Lüsebrink >>>> (https://surfer.nmr.mgh.harvard.edu/fswiki/HiResRecon). I thought it might >>>> be helpful for others, too, as there are some questions about it in the >>>> mailing list archives, so here it >>>> is: https://github.com/thomastweets/freesurfer-7t-pipeline. I am happy >>>> about any comments! >>>> >>>> Best, >>>> Thomas >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> The information in this e-mail is intended only for the person to whom it >>>> is >>>> addressed. If you believe this e-mail was sent to you in error and the >>>> e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>>> error >>>> but does not contain patient information, please contact the sender and >>>> properly >>>> dispose of the e-mail. >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
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