Hi Stefano it depends what the geometry you want the output volume to be. If you use e.g. norm.mgz it will sample it into a a 256^3 "conformed" volume. To resapmle to Talairach you will need to use the subject's transforms/talairach.xfm
cheers Bruce On Fri, 16 Oct 2015, std...@virgilio.it wrote: > I'd like to open with FSLview the sig.nii.gz which is produced by > selxavg3-sess. > If I use mri_surf2vol, which is the template to added in --template? > It should be in Tailairach space? Where can I find the template that I > should added? > Thanks, > > Stefano > > subj/rest/fc.seed.surf.lh/L_seed/sig.nii.gz > data_type FLOAT32 > dim1 27307 > dim2 1 > dim3 6 > dim4 1 > datatype 16 > pixdim1 1.000000 > pixdim2 1.000000 > pixdim3 1.000000 > pixdim4 1100.000000 > cal_max 49.1815 > cal_min -12.3855 > file_type NIFTI-1+ > > > > > > > > Thanks, > > Stefano > > >> ----Messaggio originale---- >> Da: gr...@nmr.mgh.harvard.edu >> Data: 29-set-2015 22.09 >> A: <freesurfer@nmr.mgh.harvard.edu> >> Ogg: Re: [Freesurfer] R: import FS-FAST results in FSL >> >> Do you mean surface-based analysis? You'd have to put them back into > the >> volume using mri_surf2vol, write them out as nifti and then run > fslview >> on them >> >> On 09/29/2015 11:17 AM, std...@virgilio.it wrote: >>> >>> Hi list, >>> >>> I would like to import FS-FAST results (conjunction maps) in > FSL, >>> opening them by fslview. >>> Could you provide me any suggestion? >>> >>> Thank you very much >>> Best regards, >>> >>> >>> Stefano >>> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard. > edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to > whom it is >> addressed. If you believe this e-mail was sent to you in error and > the e-mail >> contains patient information, please contact the Partners Compliance > HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to > you in error >> but does not contain patient information, please contact the sender > and properly >> dispose of the e-mail. >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
