Hi Stefano mri_vol2surf samples the volume onto the surface and saves it as a 1D list of values, one per surface vertex. You can't view that in fslview AFAIK - you need to load a surface in freeview/tksurfer and visualize it as an overlay on the surface.
cheers Bruce On Tue, 27 Oct 2015, std...@virgilio.it wrote: > Yes I would like to open with fslview (FSL) the sig.nii.gz of each > subject which is computed by seed-based analysis by FS-FAST. > I have mask the sig.nii.gz by fslmaths -div > I have run: > mri_vol2surf --src sig_mask.nii.gz --src_type nii.gz --srcreg > subj/rest/001/register.dof6.dat --hemi rh --o prova.nii.gz > > but when I open the prova.nii.gz with fslview the windows is empty > with a line. > > Thanks > > > Stefano > >> ----Messaggio originale---- >> Da: gr...@nmr.mgh.harvard.edu >> Data: 29-set-2015 22.09 >> A: <freesurfer@nmr.mgh.harvard.edu> >> Ogg: Re: [Freesurfer] R: import FS-FAST results in FSL >> >> Do you mean surface-based analysis? You'd have to put them back into > the >> volume using mri_surf2vol, write them out as nifti and then run > fslview >> on them >> >> On 09/29/2015 11:17 AM, std...@virgilio.it wrote: >>> >>> Hi list, >>> >>> I would like to import FS-FAST results (conjunction maps) in > FSL, >>> opening them by fslview. >>> Could you provide me any suggestion? >>> >>> Thank you very much >>> Best regards, >>> >>> >>> Stefano >>> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard. > edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to > whom it is >> addressed. If you believe this e-mail was sent to you in error and > the e-mail >> contains patient information, please contact the Partners Compliance > HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to > you in error >> but does not contain patient information, please contact the sender > and properly >> dispose of the e-mail. >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
