HI Anastasia, I'm new to tracula. I was able to get the stats of each diffusion parameter for each tract, as shown below. However, when I try and use waypoint in freeview to display the mean paths, using the command here:
freeview -w /data/bil-mb2/fMRI/CAST/all_freesurfer_subjectsdir/stats/*.path.mean.txt ------------------------------------------------------------------------ I get the below error. Please let me know if you have any ideas as to what could be wrong here. Thanks very much. Karuna advaita.129> cd /data/bil-mb2/fMRI/CAST/all_freesurfer_subjectsdir/stats/ advaita.130> ls *.path.mean.txt fmajor_PP.avg33_mni_bbr.path.mean.txt lh.cst_AS.avg33_mni_bbr.path.mean.txt rh.atr_PP.avg33_mni_bbr.path.mean.txt rh.slfp_PP.avg33_mni_bbr.path.mean.txt fminor_PP.avg33_mni_bbr.path.mean.txt lh.ilf_AS.avg33_mni_bbr.path.mean.txt rh.cab_PP.avg33_mni_bbr.path.mean.txt rh.slft_PP.avg33_mni_bbr.path.mean.txt lh.atr_PP.avg33_mni_bbr.path.mean.txt lh.slfp_PP.avg33_mni_bbr.path.mean.txt rh.ccg_PP.avg33_mni_bbr.path.mean.txt rh.unc_AS.avg33_mni_bbr.path.mean.txt lh.cab_PP.avg33_mni_bbr.path.mean.txt lh.slft_PP.avg33_mni_bbr.path.mean.txt rh.cst_AS.avg33_mni_bbr.path.mean.txt lh.ccg_PP.avg33_mni_bbr.path.mean.txt lh.unc_AS.avg33_mni_bbr.path.mean.txt rh.ilf_AS.avg33_mni_bbr.path.mean.txt advaita.131> freeview -w /data/bil-mb2/fMRI/CAST/all_freesurfer_subjectsdir/stats/*.path.mean.txt ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Signal received! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Release Version 2.3.3, Patch 13, Thu May 15 17:29:26 CDT 2008 HG revision: 4466c6289a0922df26e20626fd4a0b4dd03c8124 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Unknown Name on a linux-gnu named advaita.radiology.ucsf.edu by karunas Thu Jan 28 21:33:23 2016 [0]PETSC ERROR: Libraries linked from /autofs/space/lyon_006/pubsw/Linux2-2.3-i386/packages/petsc/2.3.3-p13/src/petsc-2.3.3-p13/lib/linux-gnu-c-opt [0]PETSC ERROR: Configure run at Mon Jun 16 12:09:46 2008 [0]PETSC ERROR: Configure options --with-debugging=0 --with-cc=gcc --with-fc=g77 --download-f-blas-lapack=0 --download-mpich=1 --with-mpi=1 --with-x=0 --with-gnu-copyright-code=0 --with-shared=0 COPTFLAGS=-O3 CXXOPTFLAGS=-O3 FOPTFLAGS=-O3 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [unset]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
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