Hi, Thanks for your reply. I have sought advice from someone who is experienced in Homer2 atlas viewer.
Is it possible to find out the the coordinate system of the T1.mgz file and the surface file created by FreeSurfer? Thanks! On Fri, Feb 26, 2016 at 3:36 PM, dgw <dgwake...@gmail.com> wrote: > Maheen, > > it sounds like a question that could be better answered by the Homer2 list. > > hth > d > > On Fri, Feb 26, 2016 at 8:13 AM, Maheen Siddiqui > <maheen.siddiqu...@gmail.com> wrote: > > Dear FreeSurfer Users, > > > > I have a head surface mesh and a pial surface mesh obtained after > > segmentation of a T1 MRI scan. I am going to importing these into Homer2 > > Atlas Viewer as subject anatomy. > > > > However before I can do this import successfully, I need to bring the two > > meshes into the same coordinate system. At the moment they are in > different > > coordinate systems (as pictured) and I need to bring the pial surface > mesh > > into the head surface mesh. I am a little unsure how to do this. > > > > Does anybody have any experience with this? Or any advice on what I > could do > > possibly? > > > > Thanks, > > > > Maheen > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom > it is > > addressed. If you believe this e-mail was sent to you in error and the > > e-mail > > contains patient information, please contact the Partners Compliance > > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you > in > > error > > but does not contain patient information, please contact the sender and > > properly > > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
