Thanks very much, I'll have a look! On Fri, Feb 26, 2016 at 4:13 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
> yes, they are documented pretty extensively on our wiki > https://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems > > On Fri, 26 Feb 2016, Maheen Siddiqui wrote: > > Hi, >> Thanks for your reply. I have sought advice from someone who is >> experienced >> in Homer2 atlas viewer. >> >> Is it possible to find out the the coordinate system of the T1.mgz file >> and >> the surface file created by FreeSurfer? >> >> Thanks! >> >> On Fri, Feb 26, 2016 at 3:36 PM, dgw <dgwake...@gmail.com> wrote: >> Maheen, >> >> it sounds like a question that could be better answered by the >> Homer2 list. >> >> hth >> d >> >> On Fri, Feb 26, 2016 at 8:13 AM, Maheen Siddiqui >> <maheen.siddiqu...@gmail.com> wrote: >> > Dear FreeSurfer Users, >> > >> > I have a head surface mesh and a pial surface mesh obtained >> after >> > segmentation of a T1 MRI scan. I am going to importing these >> into Homer2 >> > Atlas Viewer as subject anatomy. >> > >> > However before I can do this import successfully, I need to >> bring the two >> > meshes into the same coordinate system. At the moment they are >> in different >> > coordinate systems (as pictured) and I need to bring the pial >> surface mesh >> > into the head surface mesh. I am a little unsure how to do >> this. >> > >> > Does anybody have any experience with this? Or any advice on >> what I could do >> > possibly? >> > >> > Thanks, >> > >> > Maheen >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > >> > The information in this e-mail is intended only for the person to >> whom it is >> > addressed. If you believe this e-mail was sent to you in error and >> the >> > e-mail >> > contains patient information, please contact the Partners Compliance >> > HelpLine at >> > http://www.partners.org/complianceline . If the e-mail was sent to >> you in >> > error >> > but does not contain patient information, please contact the sender >> and >> > properly >> > dispose of the e-mail. >> > >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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