After a long break, back to this… My goal is still to get the betas for the first and maybe second spm hrf so I can calculate a Calhoun derivative boost measure.
As a first step I ran: mkanalysis-sess -fsd bold -analysis RPA.sm05.lh -surface fsaverage lh -fwhm 5 -event-related -paradigm RPA1fix.par -nconditions 12 -spmhrf 1 -TR 2 -refeventdur .25 -polyfit 2 -per-run -force -nuisreg nuisreg.dat 6 -tpexclude tpexclude.dat -b0dc to use the SPM HRF with one derivative. Then: selxavg3-sess -sf sessidlistALL.dat -analysis RPA.sm05.lh I got the following error: ERROR: flac_evconw(): conVinc, Condition01 evrw dim mismatch This condition has 2 regressors, but evrm has 1 Struct contents reference from a non-struct array object. Error in flac_conmat (line 37) if(nthcon > length(flac.con)) Error in flac_customize (line 369) flacnew = flac_conmat(flacnew,nthcon); Error in fast_selxavg3 (line 65) flac0 = flac_customize(flac0); >> ------------------------------------------ ERROR: fast_selxavg3() failed\n This ran fine with spmhrf 0 based on your prior response below that: "This is what happens. If you want to use the derivatives, then you need to spec -setwdelay. When you run the command, it will prompt you for 3 values to use. If you spec 1 0 0, then it will be the same as the default. If you want to test only the first derivative, then you would spec 0 1 0. Note that the 3rd regressor is the 2nd derivative wrt time, not the first derivative wrt the dispersion parameter. You cannot get the Calhoun 2004 value using a contrast (it is non-linear).” I tried: mkanalysis-sess -fsd bold -analysis RPA.sm05.lh -surface fsaverage lh -fwhm 5 -event-related -paradigm RPA1fix.par -nconditions 12 -spmhrf 1 -TR 2 -refeventdur .25 -polyfit 2 -per-run -force -nuisreg nuisreg.dat 6 -tpexclude tpexclude.dat -b0dc -setwdelay but I just got the error: ERROR: Flag -setwdelay unrecognized. I also tried using the flag when setting up the contrasts but that didn’t work either. so not quite sure what I’m doing wrong. I had understood from your response below that the contrast weights didn’t need to be changed from the spmhrf 0 case but perhaps I misunderstood? any help would be welcome! Joe > On Jul 10, 2013, at 13:58, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > > I was just thinking you could load the beta into matlab, make the > Calhoun computations on each condition, then compute the contrasts, then > write out the new volume > > > On 07/10/2013 01:40 PM, Joseph Dien wrote: >> Sounds good! >> >> Regarding creating a new volume and computing contrasts from it, what >> do you mean? I didn't follow that. >> >> Thanks! >> >> Joe >> >> >> On Jul 10, 2013, at 1:33 PM, Douglas N Greve >> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: >> >>> >>> On 07/10/2013 01:29 PM, Joseph Dien wrote: >>>> Sorry, not following what you are suggesting? >>>> >>>> I want the second derivative for calculating the Calhoun et al 2004 >>>> derivative boost measure. >>>> My understanding is that to the extent that the BOLD signal deviates >>>> from the canonical hrf, the amplitude of the primary regressor will be >>>> attenuated and the variance will instead end up in the first and >>>> second derivatives (to the extent that they are able to accommodate >>>> the divergence). By using a Calhoun measure that incorporates both >>>> the first and second derivatives, in principle I'll have a BOLD >>>> measure that is more robust to deviations from the canonical hrf. >>> Sorry, it had been a while since I read that paper. I did not know that >>> they had a formulation that included the 2nd derivative. >>>> >>>> However, if the way FSFAST is calculating the second derivative >>>> regressor is resulting in loss of statistical power due to shared >>>> variance with the primary regressor, then it would be best to just not >>>> include it at all in the estimation step. >>> I don't know how much it will hurt the power. You'd have to look at the >>> efficiency. >>> doug >>> >>>> >>>> >>>> On Jul 10, 2013, at 1:21 PM, Douglas N Greve >>>> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>> >>>> wrote: >>>> >>>>> >>>>> Why not just create a new volume and then compute contrasts from >>>>> the new >>>>> volume? What you are suggesting will work I think, but it leaves me a >>>>> little nervous. The p-values will be meaningless. >>>>> >>>>> >>>>> As for the 2nd derivative, I think it must be a numerical issue (it is >>>>> not computed analytically). Why do you need the 2nd derivative? >>>>> >>>>> doug >>>>> >>>>> >>>>> >>>>> On 07/10/2013 12:47 PM, Joseph Dien wrote: >>>>>> I'm thinking of generating a modified beta.nii.gz file where the >>>>>> primary betas have been replaced with the Calhoun et al (2004) >>>>>> derivative boost measure. What do you think? Also, please note my >>>>>> question below about the second derivative as it is causing me concern >>>>>> about my analysis. Thanks! >>>>>> >>>>>> Joe >>>>>> >>>>>> >>>>>> On Jul 10, 2013, at 12:39 PM, Douglas N Greve >>>>>> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>> >>>>>> wrote: >>>>>> >>>>>>> >>>>>>> I think that would work. You would need to change the time stamps >>>>>>> on the >>>>>>> .mat file in the analysis folder. When you re-run selxavg3-sess, it >>>>>>> will >>>>>>> see that the .mat files are newer than the beta and regenerate the >>>>>>> contrasts. But what are you planning to do the the beta file? It >>>>>>> sounds >>>>>>> like a potentially bad idea >>>>>>> >>>>>>> doug >>>>>>> >>>>>>> >>>>>>> On 07/09/2013 10:26 PM, Joseph Dien wrote: >>>>>>>> It looks as though selxavg3-sess generates the contrast analyses at >>>>>>>> the same time as the beta weights. Would it be possible to >>>>>>>> run selxavg3-sess once to obtain the beta weights, modify the >>>>>>>> beta.nii.gz file, and then rerun selxavg3-sess to obtain the >>>>>>>> contrast >>>>>>>> statistics using the modified beta weights? >>>>>>>> >>>>>>>> Joe >>>>>>>> >>>>>>>> On Jul 9, 2013, at 5:08 PM, Joseph Dien <jdie...@mac.com >>>>>>>> <mailto:jdie...@mac.com> >>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>>> wrote: >>>>>>>> >>>>>>>>> I tried correlations and the 2nd derivative is definitely not >>>>>>>>> orthogonal. >>>>>>>>> >>>>>>>>>>> corrcoef([X(1:207,4) X(1:207,5) X(1:207,6)]) >>>>>>>>> >>>>>>>>> ans = >>>>>>>>> >>>>>>>>> 1.0000 -0.0000 -0.5427 >>>>>>>>> -0.0000 1.0000 -0.0298 >>>>>>>>> -0.5427 -0.0298 1.0000 >>>>>>>>> >>>>>>>>> I looked at the regressors that SPM generates for the same data: >>>>>>>>> >>>>>>>>> ans = >>>>>>>>> >>>>>>>>> 1.0000 0.0436 0.1740 >>>>>>>>> 0.0436 1.0000 -0.0226 >>>>>>>>> 0.1740 -0.0226 1.0000 >>>>>>>>> >>>>>>>>> The first derivative is not as orthogonal but the second derivative >>>>>>>>> was much more orthogonal. >>>>>>>>> Does this have to do with what you noted below about how the second >>>>>>>>> derivative is being calculated? >>>>>>>>> So does this mean I should avoid the spmhrf 2 option entirely to >>>>>>>>> avoid loss of statistical power? >>>>>>>>> >>>>>>>>> Thanks for the help! >>>>>>>>> >>>>>>>>> Joe >>>>>>>>> >>>>>>>>> >>>>>>>>> On Jul 9, 2013, at 4:34 PM, Joseph Dien <jdie...@mac.com >>>>>>>>> <mailto:jdie...@mac.com> >>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>>> wrote: >>>>>>>>> >>>>>>>>>> Thanks for the quick response! So if I wanted to use the Calhoun >>>>>>>>>> 2004 approach, I should be able to use the Steffener 2010 >>>>>>>>>> correction >>>>>>>>>> to address the violation of the assumption that the regressors >>>>>>>>>> were >>>>>>>>>> standardized and generate a new beta.nii.gz file where the primary >>>>>>>>>> beta values have been replaced with the Calhoun 2004 measure. >>>>>>>>>> Can I >>>>>>>>>> assume the three regressors are more or less orthogonal? I got >>>>>>>>>> non-zero numbers when I tried to test the assumption in the Xtmp.X >>>>>>>>>> variable >>>>>>>>>> >>>>>>>>>> sum(X(1:207,4).*X(1:207,5)) >>>>>>>>>> >>>>>>>>>> but not hugely non-zero so maybe just rounding errors? >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> On Jul 9, 2013, at 4:16 PM, Douglas N Greve >>>>>>>>>> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: >>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> On 07/09/2013 04:11 PM, Joseph Dien wrote: >>>>>>>>>>>> Hi, >>>>>>>>>>>> I have a question about how mkcontrast-sess works. I ran an >>>>>>>>>>>> analysis using the mkanalysis-sess option spmhrf 2 so there are >>>>>>>>>>>> three >>>>>>>>>>>> regressors for each predictor, the primary, the latency, and the >>>>>>>>>>>> dispersion. When specifying the contrast weights for >>>>>>>>>>>> mkcontrast-sess, >>>>>>>>>>>> the documentation indicates that they are specified in terms >>>>>>>>>>>> of the >>>>>>>>>>>> conditions as numbered in the paradigm file, not the individual >>>>>>>>>>>> regressors. Furthermore there only appears to be one contrast >>>>>>>>>>>> value >>>>>>>>>>>> output for each contrast, not three. >>>>>>>>>>>> >>>>>>>>>>>> How are the three regressors being handled? I can think of >>>>>>>>>>>> several >>>>>>>>>>>> scenarios: >>>>>>>>>>>> >>>>>>>>>>>> 1) the contrast weights are not actually in terms of >>>>>>>>>>>> conditions (the >>>>>>>>>>>> documentation is incorrect), they are actually in terms of the >>>>>>>>>>>> regressors (so contrasting conditions 1 and 2 could be specified >>>>>>>>>>>> as -a >>>>>>>>>>>> 1 -a 2 -a 3 -c 4 -c 5 -c 6). >>>>>>>>>>>> >>>>>>>>>>>> 2) the latency and dispersion regressors are being ignored (a >>>>>>>>>>>> common >>>>>>>>>>>> practice). The contrast weights should therefore be >>>>>>>>>>>> specified as >>>>>>>>>>>> -a 1 >>>>>>>>>>>> -c 2. >>>>>>>>>>> This is what happens. If you want to use the derivatives, >>>>>>>>>>> then you >>>>>>>>>>> need >>>>>>>>>>> to spec -setwdelay. When you run the command, it will prompt you >>>>>>>>>>> for 3 >>>>>>>>>>> values to use. If you spec 1 0 0, then it will be the same as the >>>>>>>>>>> default. If you want to test only the first derivative, then you >>>>>>>>>>> would >>>>>>>>>>> spec 0 1 0. Note that the 3rd regressor is the 2nd derivative wrt >>>>>>>>>>> time, >>>>>>>>>>> not the first derivative wrt the dispersion parameter. You >>>>>>>>>>> cannot get >>>>>>>>>>> the Calhoun 2004 value using a contrast (it is non-linear). >>>>>>>>>>> doug >>>>>>>>>>>> >>>>>>>>>>>> 3) The Calhoun et al (2004) approach is being used to >>>>>>>>>>>> combine the >>>>>>>>>>>> three regressors into a "derivative boost" amplitude >>>>>>>>>>>> measure. The contrast weights should therefore be specified >>>>>>>>>>>> as -a >>>>>>>>>>>> 1 -c 2. >>>>>>>>>>>> >>>>>>>>>>>> Thanks for any help you can give me! >>>>>>>>>>>> >>>>>>>>>>>> Joe >>>>>>>>>>>> >>>>>>>>>>>> -------------------------------------------------------------------------------- >>>>>>>>>>>> >>>>>>>>>>>> Joseph Dien, >>>>>>>>>>>> Senior Research Scientist >>>>>>>>>>>> University of Maryland >>>>>>>>>>>> >>>>>>>>>>>> E-mail: jdie...@mac.com <mailto:jdie...@mac.com> >>>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>>> Phone: 202-297-8117 >>>>>>>>>>>> http://joedien.com// <http://joedien.com//> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>> Freesurfer mailing list >>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>>>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>>>>>>>>> >>>>>>>>>>> -- >>>>>>>>>>> Douglas N. Greve, Ph.D. >>>>>>>>>>> MGH-NMR Center >>>>>>>>>>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>>> Phone Number: 617-724-2358 >>>>>>>>>>> Fax: 617-726-7422 >>>>>>>>>>> >>>>>>>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>>>>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>>>>>>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>>>>>>> <https://gate.nmr.mgh.harvard.edu/filedrop2> >>>>>>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>>>>>> Outgoing: >>>>>>>>>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>>>>>>>> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >>>>>>>>>>> >>>>>>>>>>> _______________________________________________ >>>>>>>>>>> Freesurfer mailing list >>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> The information in this e-mail is intended only for the person to >>>>>>>>>>> whom it is >>>>>>>>>>> addressed. If you believe this e-mail was sent to you in >>>>>>>>>>> error and >>>>>>>>>>> the e-mail >>>>>>>>>>> contains patient information, please contact the Partners >>>>>>>>>>> Compliance HelpLine at >>>>>>>>>>> http://www.partners.org/complianceline . If the e-mail was >>>>>>>>>>> sent to >>>>>>>>>>> you in error >>>>>>>>>>> but does not contain patient information, please contact the >>>>>>>>>>> sender >>>>>>>>>>> and properly >>>>>>>>>>> dispose of the e-mail. >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> -------------------------------------------------------------------------------- >>>>>>>>>> >>>>>>>>>> Joseph Dien, >>>>>>>>>> Senior Research Scientist >>>>>>>>>> University of Maryland >>>>>>>>>> >>>>>>>>>> E-mail: jdie...@mac.com <mailto:jdie...@mac.com> >>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>> Phone: 202-297-8117 >>>>>>>>>> http://joedien.com// <http://joedien.com//> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> _______________________________________________ >>>>>>>>>> Freesurfer mailing list >>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> The information in this e-mail is intended only for the person to >>>>>>>>>> whom it is >>>>>>>>>> addressed. If you believe this e-mail was sent to you in error and >>>>>>>>>> the e-mail >>>>>>>>>> contains patient information, please contact the Partners >>>>>>>>>> Compliance >>>>>>>>>> HelpLine at >>>>>>>>>> http://www.partners.org/complianceline >>>>>>>>>> <http://www.partners.org/complianceline> . If the e-mail was sent to >>>>>>>>>> you in error >>>>>>>>>> but does not contain patient information, please contact the >>>>>>>>>> sender >>>>>>>>>> and properly >>>>>>>>>> dispose of the e-mail. >>>>>>>>> >>>>>>>>> >>>>>>>>> -------------------------------------------------------------------------------- >>>>>>>>> >>>>>>>>> Joseph Dien, >>>>>>>>> Senior Research Scientist >>>>>>>>> University of Maryland >>>>>>>>> >>>>>>>>> E-mail: jdie...@mac.com <mailto:jdie...@mac.com> >>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>> Phone: 202-297-8117 >>>>>>>>> http://joedien.com// <http://joedien.com//> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> _______________________________________________ >>>>>>>>> Freesurfer mailing list >>>>>>>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>>>>>>> >>>>>>>>> >>>>>>>>> The information in this e-mail is intended only for the person to >>>>>>>>> whom it is >>>>>>>>> addressed. If you believe this e-mail was sent to you in error and >>>>>>>>> the e-mail >>>>>>>>> contains patient information, please contact the Partners >>>>>>>>> Compliance >>>>>>>>> HelpLine at >>>>>>>>> http://www.partners.org/complianceline >>>>>>>>> <http://www.partners.org/complianceline> . If the e-mail was sent to >>>>>>>>> you in error >>>>>>>>> but does not contain patient information, please contact the sender >>>>>>>>> and properly >>>>>>>>> dispose of the e-mail. >>>>>>>> >>>>>>>> >>>>>>>> -------------------------------------------------------------------------------- >>>>>>>> >>>>>>>> Joseph Dien, >>>>>>>> Senior Research Scientist >>>>>>>> University of Maryland >>>>>>>> >>>>>>>> E-mail: jdie...@mac.com <mailto:jdie...@mac.com> >>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>> Phone: 202-297-8117 >>>>>>>> http://joedien.com// <http://joedien.com//> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>> >>>>>>> -- >>>>>>> Douglas N. Greve, Ph.D. >>>>>>> MGH-NMR Center >>>>>>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>> Phone Number: 617-724-2358 >>>>>>> Fax: 617-726-7422 >>>>>>> >>>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>>> <https://gate.nmr.mgh.harvard.edu/filedrop2> >>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>> Outgoing: >>>>>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>>>> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Freesurfer mailing list >>>>>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>>>> >>>>>> >>>>>> -------------------------------------------------------------------------------- >>>>>> >>>>>> Joseph Dien, >>>>>> Senior Research Scientist >>>>>> University of Maryland >>>>>> >>>>>> E-mail: jdie...@mac.com <mailto:jdie...@mac.com> <mailto:jdie...@mac.com >>>>>> <mailto:jdie...@mac.com>> >>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>> Phone: 202-297-8117 >>>>>> http://joedien.com// <http://joedien.com//> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>> >>>>> -- >>>>> Douglas N. Greve, Ph.D. >>>>> MGH-NMR Center >>>>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>>> Phone Number: 617-724-2358 >>>>> Fax: 617-726-7422 >>>>> >>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>> <https://gate.nmr.mgh.harvard.edu/filedrop2> >>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>> Outgoing: >>>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>> >>>> >>>> -------------------------------------------------------------------------------- >>>> >>>> Joseph Dien, >>>> Senior Research Scientist >>>> University of Maryland >>>> >>>> E-mail: jdie...@mac.com <mailto:jdie...@mac.com> <mailto:jdie...@mac.com >>>> <mailto:jdie...@mac.com>> >>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>> Phone: 202-297-8117 >>>> http://joedien.com// <http://joedien.com//> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> <https://gate.nmr.mgh.harvard.edu/filedrop2> >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> -------------------------------------------------------------------------------- >> >> Joseph Dien, >> Senior Research Scientist >> University of Maryland >> >> E-mail: jdie...@mac.com <mailto:jdie...@mac.com> <mailto:jdie...@mac.com >> <mailto:jdie...@mac.com>> >> Phone: 202-297-8117 >> http://joedien.com// <http://joedien.com//> >> >> >> >> >> >> >> >> >> >> >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > <https://gate.nmr.mgh.harvard.edu/filedrop2> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> -------------------------------------------------------------------------------- Joseph Dien, PhD Senior Research Scientist Maryland Neuroimaging Center University of Maryland, College Park E-mail: jdie...@mac.com Cell Phone: 202-297-8117 http://joedien.com
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