Thanks Bruce for your reply. The acquisition was oblique and the voxel size doesn't conform to the 1mm cube isotropic. I am trying to work on it and figure out a solution. However, if I am not, hope its okay to send you the nifti image.
Thanks and regards, Sampada Rnday, March 20, 2016, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > what do you mean by "adding" an oblique angle? If you mean acquiring the > data obliquely you should be fine as long as the voxels are close to 1mm > isotropic. > > cheers > Bruce > On Sun, 20 Mar 2016, Dr Sampada Sinha wrote: > > > Dear freesurfer experts, > > Does adding an oblique angle during coronal or axial acquisitions of T1w > > images lead to topographical errors during mri_fix_topology process? > > > > Thanks and regards, > > > > Sampada > > > > > > > > -- > > Sampada Sinha > > > > > > > > > > > > > > > > > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <javascript:;> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Sampada Sinha
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