Hi all,
I am trying to extract mean time series BOLD data using FSFAST from Cortical
ROIs + sub cortical ROIs and cerebellum.
preproc-sess -s rest210 -fsd bold -surface fsaverage lhrh -mni305 -fwhm 6
-per-run -stc odd mri_segstats --annot fsaverage lh aparc --i
rest210/bold/001/fmcpr.odd.sm6.fsaverage.lh.nii.gz --excludeid 1000 --excludeid
1004 --avgwf CorticalTimeSeries_lh.txt
mri_segstats --annot fsaverage rh aparc --i
rest210/bold/001/fmcpr.odd.sm6.fsaverage.rh.nii.gz --excludeid 2000 --excludeid
2004 --avgwf CorticalTimeSeries_rh.txt
and for cortical time series
mri_segstats --seg fsaverage/mri.2mm/aseg.mgz --ctab
/opt/freesurfer/FreeSurferColorLUT.txt --id 10 --id 11 --id 12 --id 13 --id 17
--id 18 --id 26 --id 49 --id 50 --id 51 --id 52 --id 53 --id 54 --id 58 --i
rest210/bold/001/fmcpr.odd.sm6.mni305.2mm.nii.gz --avgwf
subCorticalTimeSeries.txt
But I am not sure on how exactly to extract time series from cerebellar
regions. So if I want to extract time series from regions as described in
Buckner et.al 2011. Could I just use mri_segstats for the labels 601-628 in
FreeSurferCololLUT.txt? If not could you please direct me to processes that I
can use.
Cheers,
Sabin Khadka
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
