Hello, Sorry for raising this questions again. I posted this questions a while ago (Twice), but i haven't gotten an answer yet. Can i at least know if i can tweak something for this to work? or just give up? I tried downgrading Xquatrz, to 2.7.8, but it still doesn't work! My matlab is 2016a, could this be the problem?
Thank you for letting me know WY On Sat, Jun 25, 2016 at 10:39 AM, Walid Yassin <walidyassi...@gmail.com> wrote: > Hello again, > > Sorry for posting twice, but does someone know what might be the problem? > > Thank you in advance. > > I’m trying to run recon-all -lgi - s Subjectname on my data but i am > getting this error! > > ******************************************************* > > Error in dsearchn (line 79) > [d(i),t(i)] = min(sum((x-yi).^2,2)); > > Error in mesh_vertex_nearest (line 29) > nearestIndex = dsearchn(vertices,points); > > > Error in reorganize_verticeslist (line 28) > > [nextindex,nextvalue]=mesh_vertex_nearest(mesh_total.vertices(remaininglist,:),mesh_total.vertices(verticeslist(start_vertex),:)); > > > Error in make_roi_paths (line 93) > reorglist = reorganize_verticeslist (mesh_total, A, mesh_outer, perim, > verticeslist, step); > > > >> > ERROR: make_roi_paths did not complete successfully! > > > ******************************************************* > > > *I checked the archives and saw a reply by Marie to someone who had the > same problem.* > *She recommended changing the info inside “SearchProjectionByPial.m" in the > ~/Application/freesurfer/matlab directory to:* > > > > ******************************************************* > > function [verticeslist]=SearchProjectionOnPial(mesh_total,mesh_outer,perim, > step) > > % step is typically set between 5 and 10. Default is 7, increasing it will > % limit redundancies in the resulting path file. > > verticeslist=[]; > si=max(size(perim)); > for t=1:step:si > > [nearestIndexMT,nearestValuesMT]=mesh_vertex_nearest(mesh_total.vertices,mesh_outer.vertices(perim(t),:)); > verticeslist= [verticeslist nearestIndexMT]; > end > verticeslist=unique(vertices list); > > ******************************************************* > > > Which i did, but i am still getting this error!* > Any recommendations on what to do next? I am running MATLAB_R2016. > > Thank you in advance, > > WY > >
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