Hi Doug
Thanks for the information. Could you however upload it again as the files are
unavailable atm? Due to congresses and holiday, I was not able to download it
in time.
Thank you in advance and sorry for the incovenience,
Greetings
Robby
On 05/07/16 19:17, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas
N Greve" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
gr...@nmr.mgh.harvard.edu> wrote:
You can use the version 6 mri_glmfit which you can get from here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_glmfit
On 06/16/2016 07:51 AM, Robby De Pauw wrote:
>
> Dear FreeSurfer users
>
> I am not able to extract the Z-values as they are not present in my
> output:
>
> z.mgh -- z-stat that corresponds to the significance
>
> Are these Z-values always produced (or only in case of two group
> comparison)? Is there a way to produce this map myself?
>
> This is my output after fitting the model (mri_glmfit) and after
> clusterwise correction for MC:
>
> C.dat cache.th13.abs.sig.voxel.mgh
>
> F.asc cache.th13.abs.y.ocn.dat
>
> F.csv cnr.mgh
>
> F.mgh gamma.mgh
>
> cache.th13.abs.pdf.dat gammavar.mgh
>
> cache.th13.abs.sig.cluster.mgh maxvox.dat
>
> cache.th13.abs.sig.cluster.summary sig.asc
>
> cache.th13.abs.sig.masked.mgh sig.csv
>
> cache.th13.abs.sig.ocn.annot sig.mgh
>
> cache.th13.abs.sig.ocn.mgh
>
> I am currently working on the latest version of FreeSurfer:
>
> freesurfer-Darwin-lion-stable-pub-v5.3.0
>
> Thank you for your response,
>
> Greetings
>
> Robby
>
> Robby De Pauw, PT, MT, drs.
>
> *T *+32 09 332 12 19* | Email *robby.dep...@ugent.be
> <mailto:robby.dep...@ugent.be>
>
> Ghent University *| *Rehabilitation Sciences and Physiotherapy
>
> Campus Heymans 3B3 (022)
>
> De Pintelaan 185 BE-9000 Ghent
>
> Route to my office <https://soleway.ugent.be/routes/1090>
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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