I see now, thanks for the answer. If I may, is there any particular reason why such a disparity between two subjects, is this due to anatomical variability between individuals? I was surprised by the 9,000 values that was missing.
On Fri, Oct 14, 2016 at 10:40 AM, Douglas Greve <gr...@nmr.mgh.harvard.edu> wrote: > The entire medial wall has thickness values of 0 because there is no > cortex there. There needs to be a surface in that area because we need a > closed surface. > > On 10/12/16 8:10 PM, Taha Abdullah wrote: > > Hello All, > > Quick question, I ran recon-all with the qcache option and after > converting the ?.thickness.fsaverage.mgh to an ascii text file via > mri_convert I am noticing some vertices have 0mm thickness and it varies, > for example, one subject had 53 vertices labeled as zeros while another > had over 9,000 vertices. Is there a method I can use to have a thickness > value for each of the 163000+ vertices? I am not sure if this is a possible > registration issue to mni305. > > Thanks in advance, > Taha > -- > *Taha Abdullah* > *Department of Physiology,* > > *Northwestern University Feinberg School of Medicine * > *MS in Physiology and Biophysics, Georgetown University 2015* > *Work Cell: (312)-451-8468 <%28312%29-451-8468>* > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- *Taha Abdullah* *Department of Physiology,* *Northwestern University Feinberg School of Medicine* *MS in Physiology and Biophysics, Georgetown University 2015* *Work Cell: (312)-451-8468*
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