Dear Freesurfer's experts, I ran a classic recon-all and got stucked on a problem I couldn't find in the mailing list: "*mri_watershed Error: indices out of bounds*"
*mri_watershed -T1 -brain_atlas /home/global//freesurfer5.3//average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz * *Mode: T1 normalized volume* *Mode: Use the information of atlas (default parms, --help for details)* *********************************************************** *The input file is T1.mgz* *The output file is brainmask.auto.mgz* *Weighting the input with atlas information before watershed* **************************WATERSHED*************************** *Sorting...* * first estimation of the COG coord: x=125 y=200 z=49 r=52* * first estimation of the main basin volume: 593173 voxels* *mri_watershed Error: indices out of bounds* *Linux woody 4.4.0-31-generic #50~14.04.1-Ubuntu SMP Wed Jul 13 01:07:32 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux* *recon-all -s 207078_M1_2013-01-29 exited with ERRORS at Thu Mar 16 14:57:24 CET 2017* Do you have idea or clue to this problem ? Best regards, Matthieu
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