Thanks Martin. Should I be worried about affine transform masking out the global atrophy if I am using the whole brain (no skull stripping)?
Arman On Wed, Apr 12, 2017 at 9:36 PM, Martin Reuter <mreu...@nmr.mgh.harvard.edu> wrote: > Hi Arman, > > should be possible by passing the - - affine flag. I think I also > experimented around with a -base-affine flag to recon-all for that (instead > of -base). It is experimental! > > Best, Martin > > > > On 07 Apr 2017, at 13:34, Arman Eshaghi <arman.esha...@gmail.com> wrote: > > > > Hi, > > > > I wonder if there is a way for mri_robust_template to perform iterative > registration with 9 DOF rather than 6-7 default. The rational is to allow > for a bit of scaling to adjust for potential scanner drifts in a > longitudinal study over years. > > > > Thanks, > > Arman > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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