Hi all, We also have the same issue, any idea/suggestion?
Thanks. Yann > On 27 Apr 2017, at 9:43 am, Bronwyn Overs <b.ov...@neura.edu.au> wrote: > > Hi Mailing List, > > Still trying to solve the below medial surface problem. Does anyone have any > ideas? > Kind regards, > Bronwyn Overs > Research Assistant > > Neuroscience Research Australia > Margarete Ainsworth Building > Barker Street Randwick Sydney NSW 2031 Australia > M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 > > neura.edu.au <http://neura.edu.au/> > <https://twitter.com/neuraustralia> > <https://www.facebook.com/NeuroscienceResearchAustralia> > <http://www.neura.edu.au/help-research/subscribe> >> On 28 Mar 2017, at 10:51 pm, Yann Quidé <yannqu...@gmail.com >> <mailto:yannqu...@gmail.com>> wrote: >> >> Dear all, >> >> I have an equivalent issue with my data. Any idea on how to fix this? >> >> Thanks. >> >> Yann >> >> >>> Begin forwarded message: >>> >>> From: Bronwyn Overs <b.ov...@neura.edu.au <mailto:b.ov...@neura.edu.au>> >>> Subject: Re: [Freesurfer] Medial Surface Problem >>> Date: 20 March 2017 10:28:37 am AEDT >>> To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu >>> <mailto:freesurfer@nmr.mgh.harvard.edu>> >>> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu >>> <mailto:freesurfer@nmr.mgh.harvard.edu>> >>> >>> Hello again mailing list, >>> >>> Can anyone address the possible cause of the medial surface problem shown >>> below (overestimating of rh medial surface, shows up in the long image and >>> not the tp or base images). Forgot to mention that I am using freesurfer >>> v5.3 with an updated mris_make_surfaces binary (sourced from the >>> development version at >>> ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/dev_binaries/centos6_x86_64/ >>> >>> <ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/dev_binaries/centos6_x86_64/> >>> ). >>> >>> Here is the image again: >>> >>> <unknown.png> >>> Kind regards, >>> Bronwyn Overs >>> Research Assistant >>> >>> Neuroscience Research Australia >>> Margarete Ainsworth Building >>> Barker Street Randwick Sydney NSW 2031 Australia >>> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >>> >>> neura.edu.au <http://neura.edu.au/> >>> <https://twitter.com/neuraustralia> >>> <https://www.facebook.com/NeuroscienceResearchAustralia> >>> <http://www.neura.edu.au/help-research/subscribe> >>>> On 6 Mar 2017, at 1:17 pm, Bronwyn Overs <b.ov...@neura.edu.au >>>> <mailto:b.ov...@neura.edu.au>> wrote: >>>> >>>> Hi mailing list, >>>> >>>> I am currently processing a longitudinal image and have come across a >>>> problem at the medial surface in the long image (step 3). As you can see >>>> in the attached image, the rh medial surface has been significantly >>>> overestimated and extends into the lh surface. This error showed up only >>>> in only 1 of the 2 long images for this subject, and both the time-point >>>> images and the base are perfectly fine. Do you know why this is happening? >>>> >>>> <Screen Shot 2017-03-06 at 1.09.53 pm.png> >>>> >>>> >>>> Kind regards, >>>> Bronwyn Overs >>>> Research Assistant >>>> >>>> Neuroscience Research Australia >>>> Margarete Ainsworth Building >>>> Barker Street Randwick Sydney NSW 2031 Australia >>>> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >>>> >>>> neura.edu.au <http://neura.edu.au/> >>>> <https://twitter.com/neuraustralia> >>>> <https://www.facebook.com/NeuroscienceResearchAustralia> >>>> <http://www.neura.edu.au/help-research/subscribe> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>> >>>> >>>> The information in this e-mail is intended only for the person to whom it >>>> is >>>> addressed. If you believe this e-mail was sent to you in error and the >>>> e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/complianceline >>>> <http://www.partners.org/complianceline> . If the e-mail was sent to you >>>> in error >>>> but does not contain patient information, please contact the sender and >>>> properly >>>> dispose of the e-mail. >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
