Perfect --- Thank you! Ryan
> On May 15, 2017, at 6:09 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> > wrote: > > usually the fsaverage mask is fine. You can use mri_label2label with the > --outmask option to convert the ?h.cortex.label to a binary mask. You > can also pass surfcluster a label directly with the --clabel option > > > On 05/14/2017 05:45 AM, Ryan Muetzel wrote: >> Dear Experts, >> >> This is partially a follow-up question to another thread related to >> the mask.mgh generated by mri_glmfit >> (http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50691.html). >> >> We would like to use the mri_surfcluster tool on a log10p map. I’m >> wondering — for vertex-wise analyses that use freesurfer-specific >> output (e.g., thickness, surface area, lgi, etc, not FMRI or DTI >> data)….can we rely on a single mask image for each hemisphere that >> comes from the fsaverage ?h.cortex.label? Or, should we be creating a >> mask that is specific to a given analysis/dataset, as is done with >> mri_glmfit? >> >> If the latter, is there a way to create this mask outside of mri_glmfit? >> >> Thank you in advance for your time and help! >> >> Best, >> >> Ryan >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
