Dear Maria, I am also faced the similar problem when I used Philips DICOM. Then I converted to nifti format by using dcm2nii tool. It is working fine. You can also try.
Best Ramesh On Mon, Jun 5, 2017 at 7:56 PM, Maria Economou <meconom...@sheffield.ac.uk> wrote: > Dear FreeSurfer developers, > > Sorry for cross-posting, perhaps my previous e-mail was missed. > > I've been trying to run recon-all for my first subject and I keep getting > several errors like: > > ERROR: don't know how to get DWI parameters from --Philips Healthcare-- > ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 > > Too many open files > ERROR: reading /Applications/freesurfer/FreeSurferColorLUT.txt > Loading pixel data > ERROR: /Applications/CONTROLS/147364_Nd_19760623/IM-0001-0001.dcm is not > a dicom file > 70092 Requested element (18 82) not found in DCM_GetElementVM > > I have used the DICOM files from my 3D T1 MPRAGE SENSE images, so I don't > understand why I get these errors. > > This is the command i used: uos$ recon-all -subjid 147364 -i > /Applications/CONTROLS/147364_Nd_19760623/IM-0001-0001.dcm -all > > FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c > platform: OS X El Capitan Version 10.11.6 > > Please find attached the recon-all.log > > Many thanks, > Maria. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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