The orientation flag was not found. This is an important piece of
infomation that should be in the header. Have these dicoms been
anonymized? Alternatively, is this may be a newer version of dicom that
we are not reading properly yet.
On 6/25/17 9:45 PM, 糜超 wrote:
Hi,
I am preprocessing my fMRI data acquired with Philips. when I using
the command 'dcmunpack -src . -targ sess01 -run 101 bold nii f.nii .....'
The error occurred likes below:
Found 31 total files.
Found 12 unique series: 0 101 301 401 501 601 701 801 901 1001 1101 1201
Subject xxx
Date xxx
Time 110223
Institution xxxxx.
0 Survey unknown unknown unknown unknown unknown unknown ./PS_0002
101 Survey unknown unknown unknown unknown unknown 140 ./XX_0003
301 T1W_3D_TFE_ref unknown unknown unknown unknown unknown 190 ./IM_0004
401 FE_EPI unknown unknown unknown unknown unknown 2835 ./XX_0007
501 FE_EPI_EX1 unknown unknown unknown unknown unknown 2835 ./IM_0008
601 FE_EPI_EX2 unknown unknown unknown unknown unknown 2835 ./IM_0011
701 FE_EPI_EX3 unknown unknown unknown unknown unknown 2835 ./IM_0013
801 FE_EPI_EX4 unknown unknown unknown unknown unknown 2835 ./XX_0016
901 FE_EPI_EX5 unknown unknown unknown unknown unknown 2835 ./XX_0018
1001 FE_EPI_EX6 unknown unknown unknown unknown unknown 2835 ./IM_0019
1101 FE_EPI_EX7 unknown unknown unknown unknown unknown 2835 ./XX_0022
1201 FE_EPI_EX8 unknown unknown unknown unknown unknown 2835 ./XX_0024
mri_convert ./XX_0003 ./bold/101/f.nii --nskip 0 --ndrop 0
nskip = 0
ndrop = 0
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from ./XX_0003...
Starting DICOMRead2()
dcmfile = ./XX_0003
dcmdir = .
WARNING: tag image orientation not found in ./XX_0003
Ref Series No = 101
ERROR: bits = 0 not supported.
My os is Linux 16.04 and the Freesurfer's version is 5.3.
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