what is your command line? Please send the recon-all.log file
On 11/8/17 5:24 AM, aurelie ponz wrote:
Dear Freesurfer users,
I have big issues performing recon-all into the freesurfer VirtualBox.
I dont get any error but no files are created except the 0001.mgz.
Here is what I get.
WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh!
Subject Stamp: freesurfer-Linux-centos4-stable-pub-v5.3.0
Current Stamp: freesurfer-Linux-centos4-stable-pub-v5.3.0
INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects
Actual FREESURFER_HOME /usr/local/freesurfer
Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10
20:41:14 UTC 2012 i686 i686 i386 GNU/Linux
/usr/local/freesurfer/subjects/Groove_009
mri_convert
/media/sf_T1_Groove/Groove_009/Sujet_24_20161214_001_024_T1w.nii
/usr/local/freesurfer/subjects/Groove_009/mri/orig/001.mgz
mri_convert
/media/sf_T1_Groove/Groove_009/Sujet_24_20161214_001_024_T1w.nii
/usr/local/freesurfer/subjects/Groove_009/mri/orig/001.mgz
INFO: using NIfTI-1 qform
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from
/media/sf_T1_Groove/Groove_009/Sujet_24_20161214_001_024_T1w.nii...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (0.0603182, -0.982945, 0.173726)
j_ras = (-0.125291, 0.16521, 0.978268)
k_ras = (0.990285, 0.0807736, 0.113189)
writing to /usr/local/freesurfer/subjects/Groove_009/mri/orig/001.mgz...
Could you please help me I read ;ost threads and tried ;any solutions
but I didnt found a solution,
Many thanks in advance,
Aurelie
<http://cnec-projects.com>
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