Can you send the command line, your key strokes and button presses, and the terminal output leading up to the error message?
On 07/06/2017 12:27 AM, AYUSHI SHUKLA wrote: > Hi, > > Thank you for your response. > > Yes, I checked, and I do have the permission to read the file. > > Warm Regards > > Ayushi > > On Thu, 6 Jul 2017 at 09:42, Douglas Greve <[email protected] > <mailto:[email protected]>> wrote: > > Do you have read permission to that file? > > > On 6/29/17 7:04 AM, AYUSHI SHUKLA wrote: >> Hi, >> >> I'm a new user of qdec and I'm trying to run a cortical thickness >> analysis in qdec between Schizophrenic patients and healthy >> controls. >> I have run "recon-all -i" and "recon-all -s <subjid> -qcache" on >> my data and it says that this has run successfully without any >> errors. >> >> But when I hit analyze on the qdec GUI, I get the following >> error- "Error in Analyze: Couldn't open >> >> /Applications/freesurfer/subjects/5/surf/lh.thickness.fwhm10.fsaverage.mgz >> or .mgh file." >> >> I went through the old questions with the same issue, however I >> could not figure a solution for my problem as when I check in the >> directory, the file is present. I have tried to re-run recon-all >> and recon-all -s as well, but it is still giving the same error. >> I was wondering if someone could help me with this issue. >> >> >> Warm Regards >> >> Ayushi Shukla >> >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> <mailto:[email protected]> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > [email protected] <mailto:[email protected]> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
