No, sorry. You can always use the command line stream (mris_preproc, mri_surf2surf, create your fsgd file with your covariates of interest, and then run mri_glmfit)
On 11/10/17 4:13 AM, m.ba...@uliege.be wrote: > Dear Douglas, > > Thank you very much for you answer. I checked all the aparc stat files > (/Freesurfer/subjects/subjectID/stats/lh.aparc.stats; lh.aparc.a2009s.stats > ....) and my region of interest "perirhinal" (region extending on BA35 and > BA36 areas) is only present on the lh/rh.BA.stats files > (/Freesurfer/subjects/subjectID/stats/lh.BA.stats and rh.BA.stats). I use > Freesurfer version 5.3. When using Qdec tool the only uploadable files are > .aparc files. Is it possible to upload also the regions of BA.stats files? > > Best regards, > Mohamed > > ----- Mail original ----- > De: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> > À: "Mohamed Ali Bahri" <m.ba...@uliege.be>, freesurfer@nmr.mgh.harvard.edu > Envoyé: Lundi 6 Novembre 2017 23:44:43 > Objet: Re: [Freesurfer] Trans. : VBM question > > Hi Mohamed, please remember to post to the list. As for your question, > what aparc files are you looking at? Those measures are in, eg, > lh.aparc.stats > > > On 11/06/2017 04:05 AM, Mohamed Ali Bahri wrote: >> Dear Douglas, >> >> Many thanks for your answer! >> >> We are interested on one region belonging to the Brodmann areas >> "Perirhinal". Cortical thickness as well as volume values appear on >> the BA stat list and not on the aparc or aseg lists. Does the >> ROI-based analysis could be used for this BA region? >> >> Best regards, >> >> Mohamed >> >> >> On 05/11/2017 18:46, Douglas Greve wrote: >>> Do you just want to do an ROI analysis? Or do you want to do a >>> voxel-based analysis? If ROI-based, then follow the steps on the ROI >>> tutorial (ie, aparcstats2table and mri_glmfit with --table input). >>> >>> >>> On 11/3/17 4:08 PM, Bruce Fischl wrote: >>>> Hi Mohamed >>>> >>>> Doug is away this week and can give you a more details answer next >>>> week. Certainly you could use mris_anatomical_stats -l <BA label >>>> file name> to compute the volume/thickness/area for each subject >>>> then do whatever GLM analysis you want outside of FS. >>>> >>>> cheers >>>> Bruce >>>> >>>> >>>> On Fri, 3 Nov 2017, m.ba...@uliege.be wrote: >>>> >>>>> Dear All, >>>>> Does anyone have an answer to the following VBM question? >>>>> >>>>> Many thanks in advance, >>>>> Regards >>>>> >>>>> -----Mail original----- >>>>> De: "Mohamed Ali Bahri" <m.ba...@uliege.be> >>>>> À: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> >>>>> Envoyé: Jeudi, Novembre 2, 2017 06:08:33 PM >>>>> Objet: [Freesurfer] VBM question >>>>> >>>>> Dear Freesurfer users, >>>>> >>>>> I would like to study the between groups changes of volume/cortical >>>>> thickness of one region (Perirhinal) belonging to the Brodmann >>>>> areas. I >>>>> tried to do that with Qdec tool but unfortunately Qdec does not >>>>> load the >>>>> Brodmann areas stat list. I am wondering if I could use the GLM >>>>> formalism with of course regressing out the ITV. Any suggestion/advice >>>>> will be very welcome. >>>>> >>>>> Many thanks in advance, >>>>> >>>>> Best regards, >>>>> >>>>> Mohamed >>>>> >>>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >> -- >> Dr. Mohamed Ali Bahri, >> 1er Logisticien de Recherche, >> Cyclotron Research Centre, >> University of Liège, Belgium >> m.ba...@uliege.be _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
