Dear Lauri, Your problem is that GLIBCXX_3.4.15 was not found by kvlApplyTransform, so the left model was not successfully flipped to create the right model – which is why your right hippocampus appears flipped. Andrew: any ideas on how to fix this? Cheers, /Eugenio PS: the dev version does not depend on this executable anymore
-- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ On 10/01/2018, 21:29, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Eugenio" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of e.igles...@ucl.ac.uk> wrote: Dear Lauri, Would you mind sending me the log of the subfield segmentation? Cheers, /Eugenio -- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ On 08/01/2018, 22:04, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Tuominen, Lauri Johannes" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of ltuomi...@mgh.harvard.edu> wrote: Dear Freesurfers, When I run freesurfer 6.0 recon-all -hippocampal-subfields-T1 command to segment an MNI152 template, the resulting segmentation of left hippocampus got flipped in left-right dimension. Otherwise the right hippocampus and other subcortical segmentations in the aseg-file look fine. I encountered a similar problem when I tried to segment a T1 acquired at 7T. I run the command both locally and then on launchpad. Would you know how to fix this? Thanks so much for your advice! Lauri Tuominen _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
