Can you send the make_average-subject command and log file?
On 9/21/18 7:03 AM, C.P.E. Rollins wrote:
External Email - Use Caution
Hello Freesurfer Developpers,
I'm attempting to make a study specific template using all of my subjects as
input using the make_average_subject command, but am receiving the following
error:
Building hash of lh white
Building hash of lh pial
Building hash of rh white
Building hash of rh pial
Loading aseg from
/lustre/group/p00355/REST_Beijing_SCZ/Freesurfer/average_v2/mri/aseg.presurf.hypos.mgz
ASeg Vox2RAS: -----------
-1.00000 0.00000 0.00000 128.00000;
0.00000 0.00000 1.00000 -128.00000;
0.00000 -1.00000 0.00000 128.00000;
0.00000 0.00000 0.00000 1.00000;
mghRead(mri/norm.mgz, -1): could not open file
-------------------------
Labeling Slice
relabeling unlikely voxels in interior of white matter
Segmentation fault (core dumped)
Linux wbic-cs-5 3.16.0-6-amd64 #1 SMP Debian 3.16.57-2 (2018-07-14) x86_64
GNU/Linux
recon-all -s average_v2 exited with ERRORS at Fri Sep 21 11:11:25 BST 2018
I've attached here the full log file.
I read in this forum:
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg57030.html to
try installing the following patch:
https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/
and had asked our computing support team to install it before the current run
of make_average_subject, so the error seems to be happening despite the patch.
I would greatly appreciate your suggestions for resolving the error.
Thanks very much,
Colleen
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