p.s. if you look in the recon-all.log you will see:
total used free shared buff/cache
available
Mem: 4025436 1115872 794808 54712 2114756
2510316
Swap: 0 0 0
which looks like something else was running on your machine and taking a
lot of the total RAM
cheers
Bruce
On Thu, 13 Dec 2018,
张亮军 wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
I'm attempting to use "recon-all -i T1.nii.gz -s zhang -all", but there is a
ERROR:
saving intensity scales to aseg.auto_noCCseg.label_intensities.txt
saving sequentially combined intensity scales to
aseg.auto_noCCseg.label_intensities.txt
Killed
Linux ubuntu 4.10.0-37-generic #41~16.04.1-Ubuntu SMP Fri Oct 6 22:42:59 UTC
2017 x86_64 x86_64 x86_64 GNU
/Linux
recon-all -s zhang exited with ERRORS at Wed Dec 12 22:18:35 CST 2018
For more details, see the log file
/usr/local/freesurfer/subjects/zhang/scripts/recon-all.log
I've searched the list and no similar errors have been reported. Does anyone
have any thoughts on how to t
rouble-shoot this one? Also, I've attached the recon-all.log in case it's of any use.
1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
2) Platform: Ubuntu16.04 LTS(VMware Workstations pro)
3) uname -a: Linux ubuntu 4.10.0-37-generic #41~16.04.1-Ubuntu SMP Fri Oct 6
22:42:59 UTC 2017 x86_64 x86_
64 x86_64 GNU/Linux
4) recon-all.log: killed
Best,
Liangjun.
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