External Email - Use Caution Dear Yixin, Yes, give segmentHA_T1.sh a shot. You need to install the development version of FreeSurfer, though. Cheers, /Eugenio
-- Juan Eugenio Iglesias ERC Senior Research Fellow Centre for Medical Image Computing (CMIC) University College London Research staff Martinos Center for Biomedical Imaging Massachusetts General Hospital Research Affiliate Computer Science and Artificial Intelligence Laboratory (CSAIL) Massachusetts Institute of Technology Lecturer on Radiology Harvard Medical School http://www.jeiglesias.com From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Yixin Ma <yixin...@gmail.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Monday, 11 February 2019 at 10:01 To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] hippocampus subfield division External Email - Use Caution Hi Freesurfer experts, I'm writing to ask about the hippocampus subfield division again. Last time, I gave you an example of the subject that I failed to run the hippocampal subfield division, and you told me that you were able to run the hippocampus subfield on your laptop. I was using the older command of recon-all -all -s bert -hippocampal-subfields-T1. Should I try to use the newer version: segmentHA_T1.sh bert [SUBJECTS_DIR]. Is that possible FreeSurfer upgrading is the reason that I failed to run a subject on my server recently (but I was able to run it before). Also, can I ask where can I find the file of segmentHA_T1.sh? Thanks for your help. Cheers, Yixin
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