External Email - Use Caution Thank you for your reply. I also want to know which file has just finished with 1-3 steps? Is it nu.mgz? Or nu.mgz?
*T1.mgz * aseg.presurf.mgz > aparc+aseg.mgz brain.finalsurfs.mgz * > norm.mgz > * aparc.DKTatlas+aseg.mgz *brain.mgz * > *nu.mgz* aparc.a2009s+aseg.mgz > brainmask.auto.mgz aseg.auto.mgz brainmask.mgz > *orig.mgz * ctrl_pts.mgz > *orig_nu.mgz * wm.asegedit.mgz aseg.auto_noCCseg.mgz filled.mgz > rawavg.mgz wm.mgz aseg.mgz lh.ribbon.mgz > rh.ribbon.mgz wm.seg.mgz > aseg.presurf.hypos.mgz ribbon.mgz wmparc.mgz Best, ping Greve, Douglas N.,Ph.D. <dgr...@mgh.harvard.edu> 于2019年6月23日周日 下午9:35写道： > It does 1-3. It also labels cerebellum which you could then use to perform > #4 > > On 6/23/2019 7:03 AM, ping cao wrote: > > External Email - Use Caution > Dear expert， > > Thank you for reading! > > I want to do these four pre-processing steps: > > 1. Re-sampling each MR image to 256*256*256; > 2. Using the N3 algorithm for intensity inhomogeneity correction; > > 3. Skull stripping; > > 4. Removing the cerebellum. > > Does " *recon-all"* do all the above 4 steps automatically? If so, which > file is just finished with these four steps? If not, how can I do these > steps? > > Your help is greatly appreciated. > > > Best, > ping > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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