well, we don't run only those steps to generate any volume. Probably your
best bet would be the norm.mgz, although as Doug says it will have a
cerebellum in it, which you can strip with the aseg.mgz
cheers
Bruce
On Sun, 23 Jun 2019, ping cao wrote:
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Thank you for your reply.I also want to know which file has just finished with
1-3 steps?
Is it nu.mgz? Or nu.mgz?
T1.mgz aseg.presurf.mgz
aparc+aseg.mgz brain.finalsurfs.mgz
norm.mgz
aparc.DKTatlas+aseg.mgz brain.mgz
nu.mgz
aparc.a2009s+aseg.mgz
brainmask.auto.mgz
aseg.auto.mgz brainmask.mgz
orig.mgz ctrl_pts.mgz
orig_nu.mgz
wm.asegedit.mgz aseg.auto_noCCseg.mgz
filled.mgz
rawavg.mgz
wm.mgz
aseg.mgz lh.ribbon.mgz
rh.ribbon.mgz wm.seg.mgz
aseg.presurf.hypos.mgz
ribbon.mgz wmparc.mgz
Best,
ping
Greve, Douglas N.,Ph.D. <dgr...@mgh.harvard.edu> 于2019年6月23日周日 下午9:35写道：
It does 1-3. It also labels cerebellum which you could then use to
perform #4
On 6/23/2019 7:03 AM, ping cao wrote:
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Dear expert，
Thank you for reading!
I want to do these four pre-processing steps:
1. Re-sampling each MR image to 256*256*256;
2. Using the N3 algorithm for intensity inhomogeneity correction;
3. Skull stripping;
4. Removing the cerebellum.
Does " recon-all" do all the above 4 steps automatically? If so, which
file
is just finished with these four steps? If not, how can I do these steps?
Your help is greatly appreciated.
Best,
ping
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