is this an individual or group? what version of FS are you running. On 7/11/19 11:10 AM, Zhi Li wrote: > > External Email - Use Caution > > Dear Freesurfer experts, > > Now I am using both FSFAST and SPM to preprocessed my functional image > data. In FSFAST, I replaced the subcortical template with the whole > brain in the folder "mri.2mm", to get the whole brain volumetric data. > I have also diluted the whole brain template in FSFAST. However, as > showed in attached files, the resampled data in FSFAST seems smaller > than that of SPM. May I ask if it is normal? Would the mask creation > step in FSFAST caused this difference? I read from a previous PPT > which said "FSL BET run on the template" in mask creation. As far as I > know, the default parameter in BET may strip some part of prefrontal > lobe sometime. If FSFAST apply BET or similar algorithm to strip > skull, may I ask how could I change the parameter? Looking forward to > your kind suggestions. > > Thanks and best wishes, > > Lizhi > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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