that or see here
https://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat
On 7/15/2019 9:39 AM, Bruce Fischl wrote:
you can do this with mri_convert:
mri_convert -rl native_volume.mgz -rt nearest apas+head.mgz apas+head.native.mgz
cheers
Bruce
On Mon, 15 Jul 2019, Laboratorio de Neurociencia Funcional wrote:
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Thank you, Doug. The voxel resolution of the apas+head.mgz file is 1mm3.
Would it be possible to obtain the same file but with the native resolution?
Best,
Jose
El lun., 15 jul. 2019 a las 6:01, Greve, Douglas N.,Ph.D.
(<dgr...@mgh.harvard.edu><mailto:dgr...@mgh.harvard.edu>) escribió:
You can try running gtmseg. You will not want its final output,
but along the way it will produce a file called apas+head.mgz,
and this will have a semi-good segmentation of extracerebral
CSF.
On 7/12/2019 12:14 PM, Laboratorio de Neurociencia Funcional
wrote:
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Dear Freesurfer experts,
Is there any way to obtain a CSF mask in Freesurfer similar to that obtained
with the SPM segmentation (see attached file)? I would need that the CSF ma
sk contains not only the cerebral ventricles but also the extracerebral CSF.
Any help with this would be greatly appreciated.
Best regards, Jose
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