Can you send the full text of the terminal output? On 9/4/19 10:44 AM, Maxime Perron wrote: > External Email - Use Caution > > Hi Greve, > > The exact script is the following : > ____ > > setenv SUBJECTS_DIR > /Volumes/Groups/tremblay/Projets/Projet_192_2017_Chant_PascaleT/Etude2_IRM/Analyse_morpho/Subject_data > > make_average_subject --subjects "Freesurfer_S002" "Freesurfer_S003" > "Freesurfer_S004" "Freesurfer_S014" "Freesurfer_S018_2" "Freesurfer_S020" > "Freesurfer_S021" "Freesurfer_S023" "Freesurfer_S024" "Freesurfer_S027" > "Freesurfer_S029" "Freesurfer_S035" "Freesurfer_S037" "Freesurfer_S039" > "Freesurfer_S040" "Freesurfer_S043" "Freesurfer_S044" "Freesurfer_S046" > "Freesurfer_S048" "Freesurfer_S053" "Freesurfer_S060" "Freesurfer_S061" > "Freesurfer_S064" "Freesurfer_S066" "Freesurfer_S068" "Freesurfer_S070" > "Freesurfer_S071" "Freesurfer_S078" "Freesurfer_S083" "Freesurfer_S084" > "Freesurfer_S088" "Freesurfer_S090" "Freesurfer_S093" "Freesurfer_S095" > "Freesurfer_S103" "Freesurfer_S105" "Freesurfer_S106" "Freesurfer_S108" > "Freesurfer_S110" "Freesurfer_S111" "Freesurfer_S113" "Freesurfer_S114" > "Freesurfer_S115" "Freesurfer_S117" "Freesurfer_S118" "Freesurfer_S119" > "Freesurfer_S120" "Freesurfer_S122" "Freesurfer_S123" "Freesurfer_S125" > "Freesurfer_S126" "Freesurfer_S129" "Freesurfer_S130" "Freesurfer_S133" > "Freesurfer_S134" "Freesurfer_S139" "Freesurfer_S141" "Freesurfer_S142" > "Freesurfer_S144" "Freesurfer_S145" "Freesurfer_S146" "Freesurfer_S147" > "Freesurfer_S148" "Freesurfer_S150" "Freesurfer_S151" "Freesurfer_S152" > "Freesurfer_S153" "Freesurfer_S154" "Freesurfer_S155" "Freesurfer_S156" > "Freesurfer_S158" "Freesurfer_S164" --out BrainaverageN72 > > cd > /Volumes/Groups/tremblay/Projets/Projet_192_2017_Chant_PascaleT/Etude2_IRM/Analyse_morpho/Subject_data/BrainaverageN72 > mkdir ori > > cd > /Volumes/Groups/tremblay/Projets/Projet_192_2017_Chant_PascaleT/Etude2_IRM/Analyse_morpho/Subject_data/BrainaverageN72 > @SUMA_Make_Spec_FS -NIFTI -sid BrainaverageN72 > > _____ > > BrainaverageN72 is the output name. > > Thanks, > Maxime Perron > ________________________________________ > De : freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> de la part de Greve, Douglas > N.,Ph.D. <dgr...@mgh.harvard.edu> > Envoyé : 4 septembre 2019 10:37 > À : freesurfer@nmr.mgh.harvard.edu > Objet : Re: [Freesurfer] make_average_subject error > > Is BrainaverageN72 in the subjects list? > > On 9/3/19 12:39 PM, Maxime Perron wrote: >> External Email - Use Caution >> >> Dear Freesurfer Experts, >> >> >> I have the following issue when running the make_average_subject command ( >> >> make_average_subject --subjects (Subjid) --out BrainaverageN72) : >> >> >> Building hash of lh white >> >> Building hash of lh pial >> >> Building hash of rh white >> >> Building hash of rh pial >> >> Loading aseg from >> /Volumes/Groups/tremblay/Projets/Projet_192_2017_Chant_PascaleT/Etude2_IRM/Analyse_morpho/Subject_data/BrainaverageN72/mri/aseg.presurf.hypos.mgz >> ASeg Vox2RAS: ----------- >> -1.00000 0.00000 0.00000 128.00000; >> 0.00000 0.00000 1.00000 -128.00000; >> 0.00000 -1.00000 0.00000 128.00000; >> 0.00000 0.00000 0.00000 1.00000; >> mghRead(mri/norm.mgz, -1): could not open file >> ------------------------- >> >> Labeling Slice >> relabeling unlikely voxels in interior of white matter >> Segmentation fault >> Darwin tulipe.crulrg.local 17.7.0 Darwin Kernel Version 17.7.0: Sun >> Jun 2 20:31:42 PDT 2019; root:xnu-4570.71.46~1/RELEASE_X86_64 x86_64 >> >> recon-all -s BrainaverageN72 exited with ERRORS at Tue Sep 3 11:33:02 >> EDT 2019 >> >> >> I appreciate any help. >> >> Regards, >> Maxime >> >> >> >> >> >> >> >> >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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