External Email - Use Caution I tried in the command window where I started freeview but nothing happened. This is the output
miguel@miguel-VirtualBox:~$ ls /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz El mar., 17 sept. 2019 a las 1:56, Ruopeng Wang (<rpw...@nmr.mgh.harvard.edu>) escribió: > Can you run the command in the command window that you start freeview? > > Ruopeng > > On Sep 16, 2019, at 5:11 PM, Miguel Ángel Rivas Fernández < > miguelrivasf...@gmail.com> wrote: > > External Email - Use Caution > > Dear Ruopeng, > > I put that command in the freeview command console and this is the output > > [FreeView] ls /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz > This is not a shell. Only freeview commands are supported. Type '-h' for > all the available commands. > > > > Best regards, > > El lun., 16 sept. 2019 a las 22:58, Ruopeng Wang (< > rpw...@nmr.mgh.harvard.edu>) escribió: > >> If you run: >> >> ls /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz >> >> What does it show? >> >> Ruopeng >> On 9/16/19 4:29 PM, Miguel Ángel Rivas Fernández wrote: >> >> External Email - Use Caution >> Dear Freesurfer devs, >> >> I tried to open the brainmask.mgz file in freeview but I obtained this >> error: >> >> >> mghRead(/usr/local/freesurfer/subjects/4227/mri/brainmask.mgz, -1): could >> not open file >> MRIread failed: Unable to read from >> /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz >> mghRead(/usr/local/freesurfer/subjects/4227/mri/brainmask.mgz, -1): could >> not open file >> >> Any suggestion about what could be the problem?, maybe the write >> permissons of the freesurfer folder? >> >> I am using the freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c >> version that is installed in a Ubuntu 18.04 virtual machine. It is very >> strange because few weeks ago everything it was working correctly. >> >> Thanks in advance. >> >> >> Best regards, >> -- >> *Miguel Ángel Rivas Fernández* >> >> _______________________________________________ >> Freesurfer mailing >> listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > *Miguel Ángel Rivas Fernández* > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- *Miguel Ángel Rivas Fernández*
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