Is your work disk full?
On 9/17/19 10:22 AM, Miguel Ángel Rivas Fernández wrote:
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I tried in the command window where I started freeview but nothing
happened. This is the output
miguel@miguel-VirtualBox:~$ ls
/usr/local/freesurfer/subjects/4227/mri/brainmask.mgz
/usr/local/freesurfer/subjects/4227/mri/brainmask.mgz
El mar., 17 sept. 2019 a las 1:56, Ruopeng Wang
(<rpw...@nmr.mgh.harvard.edu <mailto:rpw...@nmr.mgh.harvard.edu>>)
escribió:
Can you run the command in the command window that you start
freeview?
Ruopeng
On Sep 16, 2019, at 5:11 PM, Miguel Ángel Rivas Fernández
<miguelrivasf...@gmail.com <mailto:miguelrivasf...@gmail.com>> wrote:
External Email - Use Caution
Dear Ruopeng,
I put that command in the freeview command console and this is
the output
[FreeView] ls /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz
This is not a shell. Only freeview commands are supported. Type
'-h' for all the available commands.
Best regards,
El lun., 16 sept. 2019 a las 22:58, Ruopeng Wang
(<rpw...@nmr.mgh.harvard.edu
<mailto:rpw...@nmr.mgh.harvard.edu>>) escribió:
If you run:
ls /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz
What does it show?
Ruopeng
On 9/16/19 4:29 PM, Miguel Ángel Rivas Fernández wrote:
External Email - Use Caution
Dear Freesurfer devs,
I tried to open the brainmask.mgz file in freeview but I
obtained this error:
mghRead(/usr/local/freesurfer/subjects/4227/mri/brainmask.mgz,
-1): could not open file
MRIread failed: Unable to read from
/usr/local/freesurfer/subjects/4227/mri/brainmask.mgz
mghRead(/usr/local/freesurfer/subjects/4227/mri/brainmask.mgz,
-1): could not open file
Any suggestion about what could be the problem?, maybe the
write permissons of the freesurfer folder?
I am using the
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
version that is installed in a Ubuntu 18.04 virtual machine.
It is very strange because few weeks ago everything it was
working correctly.
Thanks in advance.
Best regards,
--
*Miguel Ángel Rivas Fernández*
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--
*Miguel Ángel Rivas Fernández*
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_______________________________________________
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--
*Miguel Ángel Rivas Fernández*
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Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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