What is example.mgz?
If you want to transfer the orig.mgz, you can do it with
mri_vol2vol --tal --talres 1 --interp nearest --mov orig.mgz --s subject
--o example.mni305.mgz
On 2/20/2020 3:53 PM, Benjamin Ineichen wrote:
External Email - Use Caution
Dear Freesurfer experts,
In order to transform a segmentation mask (example.mgz) from native so
standard MNI space I ran:
mri_vol2vol --talres 1 --interp nearest --mov example.mgz --s 001.mgz
--targ $FREESURFER_HOME/subjects/fsaverage/mri/orig.mgz --regheader
--o example.mni305.mgz
the output example.mni305.mgz did somehow transform to a different
space as you can see in Screenshot orig where the native mask is white
and the transformed mask is red. However, the masks seems to be in a
completely different brain region in the native MNI space (Screenshot
MNI). But the point of transforming my segmentation mask is that the
segmented mask should be in the same brain region but just transformed
to the standard space. How can I correct this?
Many thanks for the support!
/Ben
--
____________________________________
Benjamin Victor Ineichen, MD PhD
Karolinska Institutet
Center for Molecular Medicine
Stockholm, Sweden
ineic...@protonmail.ch <mailto:ineic...@protonmail.ch>
+41 76 391 04 01
Dr. med. et Dr. rer. nat. ETH Benjamin Victor Ineichen
Karolinska Institutet
Center for Molecular Medicine
Stockholm, Sweden
ineic...@protonmail.ch <mailto:ineic...@protonmail.ch>
+41 76 391 04 01
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