External Email - Use Caution Dear FS list,
as soon as samseg was available in FS v6dev we used it to process some of our data. The plan was always to wait for v7 to use a stable version, but edits were made already on v6FSdev, while we waited last spring for v7 to come out. Now I have been having issues with transferring edits from v6dev into v7.1, which I thought should be a straight forward thing to do. The way I did it, is I ran v7.1 on the raw data, then I copied the files where edits where made, e.g. brainmask.mgz, wm.mgz as well as control.dat. Finally, at this point I reran recon-all -all ( since I actually couldn't get recon-all with the -make flag to work). But I see my rerun fails with the error message: Saving brainmask.auto.mgz Command terminated by signal 11 @#@FSTIME 2020:10:06:14:45:45 mri_watershed N 10 e 20.81 S 1.93 U 22.55 P 117% M 893740 F 0 R 330549 W 0 c 83 w 1353 I 22344 O 2312 L 3.35 3.67 2.94 @#@FSLOADPOST 2020:10:06:14:46:06 mri_watershed N 10 3.10 3.59 2.93 Linux krogh 4.12.14-lp151.28.59-default #1 SMP Wed Aug 5 10:58:34 UTC 2020 (337e42e) x86_64 x86_64 x86_64 GNU/Linux recon-all -s g612_GD exited with ERRORS at Tue Oct 6 14:46:06 CEST 2020 and I don't understand why. The earlier FSrun with v7.1 ran fine and I also tried copying to a separate directory to check file permissions and the same error appears again. I have uploaded the subject to the ftp server at surfer.nmr.mgh.harvard.edu and it's called subject.tar.gz. Kind regards, Melanie -- Yours sincerely Melanie Ganz-Benjaminsen Forsker Direct: + 45 35 45 67 18 Mail: melanie.g...@nru.dk Neurobiology Research Unit Rigshospitalet, building 6931 Juliane Maries Vej 28, 3rd floor DK-2100 Copenhagen, Denmark Phone: +45 3545 6712 Fax: +45 3545 6713 URL:http://nru.dk This e-mail and any attachment may contain confidential and privileged material intended for the addressee only. If you are not the addressee, you are notified that no part of the e-mail or any attachment may be disclosed, copied or distributed, and that any other action related to this e-mail or attachment is strictly prohibited, and may be unlawful. If you have received this e-mail by error, please notify the sender immediately by return e-mail, and delete this message. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
