If you want a cluster table, then you will have to run mri_surfcluster on the output of the conjunction. Run it with --help and write back if you need more info
On 11/21/2020 10:03 AM, Paula Maldonado wrote: External Email - Use Caution Dear Douglas, Could you please tell me where can I find the cluster table? Thank you, Best regards, Paula Il giorno 11 nov 2020, alle ore 17:32, Douglas N. Greve <dgr...@mgh.harvard.edu<mailto:dgr...@mgh.harvard.edu>> ha scritto: There is not a summary table, it is just a map. Do you want a cluster table? On 11/10/2020 11:26 AM, Paula Maldonado wrote: External Email - Use Caution Thanks for your reply, that worked. Can you please tell me where I can find a summary table of the activated regions resulting from the conjunction analysis? Best regards, Paula Il giorno 27 ott 2020, alle ore 22:50, Douglas N. Greve <dgr...@mgh.harvard.edu<mailto:dgr...@mgh.harvard.edu>> ha scritto: You would just run mkcontrast-sess, eg, if your four conditions are ordered condA, condAcontrol, condB, condBcont, then mkcontrast-sess -analysis analysis -contrast contrastname -a 1 -c 2 -c 3 -a 4 If you want it reversed, then just reverse the a's and c's On 10/23/2020 4:39 AM, Paula Maldonado wrote: External Email - Use Caution Dear experts, I am running an fMRI experiment in which I have four conditions: two main conditions (condition A and condition B) and two respective control conditions (condition Acontrol and condition Bcontrol). I would like to create a map showing significantly greater activity for condition A relative to condition B, after subtracting out the activity for the respective control conditions. In other words, I would like to perform the following contrast: (condition A - condition A control) - (condition B - condition B control) Then I would like to have a map that shows the reverse contrast too:(condition B - condition B control) - (condition A - condition A control). How do I do that?To obtain the first map: (condition A - condition A control) - (condition B - condition B control) I have tried with the mergecontrasts-sess function with the -conjunction flag and the OR option as detailed below: mergecontrasts-sess -mergedcontrast conjres -conjunction or -analysis analysisname -map sig -space sph -isxavg fixed -contrast Contrast1 2 pos 0 -contrast Contrast 2 pos 0 -s sessionsfMRI/Sub01/bold -hemi lh where Contrast1= (condition A - condition A control) and Contrast2= (condition B - condition B control) however the map I get is exactly the same as (condition A - condition A control), as if subtracting out Contrast 2 had no impact on the map. Thanks, Paula _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer<https://secure-web.cisco.com/1MSoNZugOE7aA1gOT7VibT4hmgT8729NyDyuSI5M_XIIJSHN9Oa6mpnmC2hkuFPGXkj7yukLmsGUfZBLZlQdYsY2AxtcrFwTAUaJit7RnSO-H3GPvE9U-FUvEA1D-EbOKM7OhgHOgL7846L6UgEhe81mVpJtl2L3sDGDBm7MSG4ChljHVJ517sv6mBgstQqHkHndzlu186P6Y6HoLybv0FzehRXKGA7DUFTgNZ2LwQfBNW5QeulsSuRIGiB3wlK4H99pjN1XyQPXgV5XCwCSaKg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer<https://secure-web.cisco.com/1MSoNZugOE7aA1gOT7VibT4hmgT8729NyDyuSI5M_XIIJSHN9Oa6mpnmC2hkuFPGXkj7yukLmsGUfZBLZlQdYsY2AxtcrFwTAUaJit7RnSO-H3GPvE9U-FUvEA1D-EbOKM7OhgHOgL7846L6UgEhe81mVpJtl2L3sDGDBm7MSG4ChljHVJ517sv6mBgstQqHkHndzlu186P6Y6HoLybv0FzehRXKGA7DUFTgNZ2LwQfBNW5QeulsSuRIGiB3wlK4H99pjN1XyQPXgV5XCwCSaKg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer<https://secure-web.cisco.com/1MSoNZugOE7aA1gOT7VibT4hmgT8729NyDyuSI5M_XIIJSHN9Oa6mpnmC2hkuFPGXkj7yukLmsGUfZBLZlQdYsY2AxtcrFwTAUaJit7RnSO-H3GPvE9U-FUvEA1D-EbOKM7OhgHOgL7846L6UgEhe81mVpJtl2L3sDGDBm7MSG4ChljHVJ517sv6mBgstQqHkHndzlu186P6Y6HoLybv0FzehRXKGA7DUFTgNZ2LwQfBNW5QeulsSuRIGiB3wlK4H99pjN1XyQPXgV5XCwCSaKg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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