External Email - Use Caution Thanks!, how can I obtain the white matter volume stats using my annotation file?
El mar, 16 mar 2021 a las 16:59, Douglas N. Greve (<dgr...@mgh.harvard.edu>) escribió: > I think they will give very similar results, but my guess is that #1 is a > little better > > On 3/8/2021 11:40 AM, Alberto Del Cerro Leon wrote: > > External Email - Use Caution > I want to use the annotation file created by myself in fsaverage to > calculate the anatomical stats, but i dont know what is the best workflow. > > 1. Convert the annotation file to each subject space using mri_sur2surf > and using mri_anatomical_stats in each subject > 2. Convert the surface of each subject to fsaverage space and use > mri_segstats to obtain the data, in this case i dont know what surface i > have to convert to fsaverage space to do it (i can see thickness > (lh/rh.thickness) and volume (lh/rh.volume) but not folding index and white > matter volume) > > Any idea? > > El lun, 8 mar 2021 a las 16:04, Fischl, Bruce (<bfis...@mgh.harvard.edu>) > escribió: > >> Hi Alberto >> >> >> >> 1. And 4. Are not properties of single surfaces – they are computed >> from the white and the pial. For 2 and 3 that is really up to you >> >> Cheers >> Bruce >> >> >> >> *From:* freesurfer-boun...@nmr.mgh.harvard.edu < >> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Alberto Del Cerro >> Leon >> *Sent:* Monday, March 8, 2021 7:02 AM >> *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> >> *Subject:* [Freesurfer] Problem with freesurfer measures >> >> >> >> * External Email - Use Caution * >> >> Hello Freesurfer team, I am using an annotation file that i've created >> previously to obtain the measures of some ROIs. To do that i am using de >> commands mri_surf2surf and mri_segstats. I want to obtain the following >> measures: >> >> 1. Gray and White Matter Volume >> >> 2. Folding Index >> >> 3. Curvature measures >> >> 4. Thickness >> >> However I don't know what surface in the surf folder of each subject I >> have to use. Could u help me? >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1G_h97ZZmS1M3Mu1WvIxpTpCamKUMZrdeii7Mb-_WyhLnqexfnx4M_Pdm9J5uI07IHMoSLX06nTKmLoGpCM__s_0BMxj3yFWmG-DrcG6_hwmbQ4lmwutoIJ7LgzXFCY1kq67Vh2ew-rSx7g1EsGVdqylYYD-iDG_k-YXsbd2bEshDXD1Qem3t3Vtnd2vU-YadqAhVEksxzWDJrWr5lnPwyL89yQGUfLXDJIiRGxyCQZxSHNkSoSCXq9BCZ85lPb6M33BVmSYeBvf-nyCBHvN7NQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> <https://secure-web.cisco.com/1YJFf9_v-FCEIEML34ObuC19lwndNnPr3qXQ27W-KJa3aD5cHD7GRwSEtVGA5l0wVfI-qwadg-4V9ONf5EZ0kiLcRjW6DVI_Rd2ZeqiMxXTIBEnUxA3T9NzdNSt8iXVZ7cyXIzeEsQeBhrig9ume-iTSL61o9NJ8xeYD0zqzkN5beVGaw6yxXpHYMufcuWsp7li3hf1daYTVoJEiUno9_8hA_Q7xVe54KZ585zoXC2r43bYx3pxJ56xQU1iAEqLf5WArPGhqVAV_6TmQ9v8C2Xw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1G_h97ZZmS1M3Mu1WvIxpTpCamKUMZrdeii7Mb-_WyhLnqexfnx4M_Pdm9J5uI07IHMoSLX06nTKmLoGpCM__s_0BMxj3yFWmG-DrcG6_hwmbQ4lmwutoIJ7LgzXFCY1kq67Vh2ew-rSx7g1EsGVdqylYYD-iDG_k-YXsbd2bEshDXD1Qem3t3Vtnd2vU-YadqAhVEksxzWDJrWr5lnPwyL89yQGUfLXDJIiRGxyCQZxSHNkSoSCXq9BCZ85lPb6M33BVmSYeBvf-nyCBHvN7NQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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